RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 MYOCDQ8IZQ8 938 aa18.31■□□□□ 0.52
USP4-201ENST00000265560 TRMT1Q9NXH9 659 aaKnown RBP18.31■□□□□ 0.52
USP4-201ENST00000265560 BCRP11274 1271 aa18.31■□□□□ 0.52
USP4-201ENST00000265560 NPEPPSP55786 919 aa18.31■□□□□ 0.52
USP4-201ENST00000265560 NLRX1Q86UT6 975 aa18.31■□□□□ 0.52
USP4-201ENST00000265560 KIAA1524Q8TCG1 905 aa18.31■□□□□ 0.52
USP4-201ENST00000265560 SMCR8Q8TEV9 937 aaPredicted RBP18.31■□□□□ 0.52
USP4-201ENST00000265560 SCFD1Q8WVM8 642 aa18.31■□□□□ 0.52
USP4-201ENST00000265560 LRRC27Q9C0I9 530 aa18.31■□□□□ 0.52
USP4-201ENST00000265560 EFCC1Q9HA90 598 aa18.31■□□□□ 0.52
USP4-201ENST00000265560 MAP3K20Q9NYL2 800 aaKnown RBP18.31■□□□□ 0.52
USP4-201ENST00000265560 MCM3APO60318 1980 aa18.31■□□□□ 0.52
USP4-201ENST00000265560 ZC3H4Q9UPT8 1303 aaKnown RBP18.3■□□□□ 0.52
USP4-201ENST00000265560 SFPQP23246 707 aaKnown RBP eCLIP18.3■□□□□ 0.52
USP4-201ENST00000265560 NMT1P30419 496 aaKnown RBP18.3■□□□□ 0.52
USP4-201ENST00000265560 SNAPC2Q13487 334 aa18.3■□□□□ 0.52
USP4-201ENST00000265560 ZC2HC1CQ53FD0 456 aaPredicted RBP18.3■□□□□ 0.52
USP4-201ENST00000265560 GBA2Q9HCG7 927 aaPredicted RBP18.3■□□□□ 0.52
USP4-201ENST00000265560 TUFT1Q9NNX1 390 aa18.3■□□□□ 0.52
USP4-201ENST00000265560 PCDHA2Q9Y5H9 948 aa18.3■□□□□ 0.52
USP4-201ENST00000265560 FRMPD4Q14CM0 1322 aa18.3■□□□□ 0.52
USP4-201ENST00000265560 SOWAHBA6NEL2 793 aa18.3■□□□□ 0.52
USP4-201ENST00000265560 POTEB2H3BUK9 544 aa18.3■□□□□ 0.52
USP4-201ENST00000265560 CLCN1P35523 988 aa18.3■□□□□ 0.52
USP4-201ENST00000265560 CCZ1BP86790 482 aa18.3■□□□□ 0.52
USP4-201ENST00000265560 CCZ1P86791 482 aaPredicted RBP18.3■□□□□ 0.52
USP4-201ENST00000265560 CT47A1Q5JQC4 288 aaPredicted RBP18.3■□□□□ 0.52
USP4-201ENST00000265560 RIOX2Q8IUF8 465 aa18.3■□□□□ 0.52
USP4-201ENST00000265560 GPIHBP1Q8IV16 184 aa18.3■□□□□ 0.52
USP4-201ENST00000265560 ANKRD13CQ8N6S4 541 aa18.3■□□□□ 0.52
USP4-201ENST00000265560 MRPL44Q9H9J2 332 aaKnown RBP18.3■□□□□ 0.52
USP4-201ENST00000265560 LCTP09848 1927 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 USP27XA6NNY8 438 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 B4DLN1 442 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 TULP1O00294 542 aaPredicted RBP18.29■□□□□ 0.52
USP4-201ENST00000265560 TPM3P06753 285 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 UBXN1Q04323 297 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 NOLC1Q14978 699 aaKnown RBP eCLIP18.29■□□□□ 0.52
USP4-201ENST00000265560 CENPPQ6IPU0 288 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 MYCT1Q8N699 235 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 CNOT6LQ96LI5 555 aaKnown RBP18.29■□□□□ 0.52
USP4-201ENST00000265560 RBBP6Q7Z6E9 1792 aaKnown RBP18.29■□□□□ 0.52
USP4-201ENST00000265560 MYPNQ86TC9 1320 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 CCL15-CCL14A0A0B4J2E2 113 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 SOX10P56693 466 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 CCL15Q16663 113 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 SPECC1LQ69YQ0 1117 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 CYFIP1Q7L576 1253 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 CHST13Q8NET6 341 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 INPP4AQ96PE3 977 aaPredicted RBP18.29■□□□□ 0.52
USP4-201ENST00000265560 NACC1Q96RE7 527 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 TBCAO75347 108 aaKnown RBP18.29■□□□□ 0.52
USP4-201ENST00000265560 KLK7P49862 253 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 CST9Q5W186 159 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 C1orf186Q6ZWK4 172 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 GUF1Q8N442 669 aaKnown RBP18.29■□□□□ 0.52
USP4-201ENST00000265560 PNMA2Q9UL42 364 aa18.29■□□□□ 0.52
USP4-201ENST00000265560 RNF225M0QZC1 329 aaPredicted RBP18.28■□□□□ 0.52
USP4-201ENST00000265560 USO1O60763 962 aaKnown RBP18.28■□□□□ 0.52
USP4-201ENST00000265560 GCNT3O95395 438 aa18.28■□□□□ 0.52
USP4-201ENST00000265560 P4HBP07237 508 aaKnown RBP18.28■□□□□ 0.52
USP4-201ENST00000265560 MTIF2P46199 727 aaKnown RBP18.28■□□□□ 0.52
USP4-201ENST00000265560 FILIP1LQ4L180 1135 aa18.28■□□□□ 0.52
USP4-201ENST00000265560 TMEM63BQ5T3F8 832 aa18.28■□□□□ 0.52
USP4-201ENST00000265560 FASTKD5Q7L8L6 764 aaKnown RBP18.28■□□□□ 0.52
USP4-201ENST00000265560 GPRC5CQ9NQ84 441 aa18.28■□□□□ 0.52
USP4-201ENST00000265560 TBC1D22BQ9NU19 505 aa18.28■□□□□ 0.52
USP4-201ENST00000265560 MAGEC2Q9UBF1 373 aaPredicted RBP18.28■□□□□ 0.52
USP4-201ENST00000265560 ARHGEF35A5YM69 484 aa18.28■□□□□ 0.52
USP4-201ENST00000265560 BTBD19C9JJ37 291 aa18.28■□□□□ 0.52
USP4-201ENST00000265560 PDHXO00330 501 aa18.28■□□□□ 0.52
USP4-201ENST00000265560 KCNA2P16389 499 aa18.28■□□□□ 0.52
USP4-201ENST00000265560 SWSAP1Q6NVH7 229 aa18.28■□□□□ 0.52
USP4-201ENST00000265560 LIMA1Q9UHB6 759 aaKnown RBP18.28■□□□□ 0.52
USP4-201ENST00000265560 FAM13AO94988 1023 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 QARSP47897 775 aaKnown RBP18.27■□□□□ 0.52
USP4-201ENST00000265560 ALDH5A1P51649 535 aaPredicted RBP18.27■□□□□ 0.52
USP4-201ENST00000265560 RBL2Q08999 1139 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 DNTTIP2Q5QJE6 756 aaKnown RBP18.27■□□□□ 0.52
USP4-201ENST00000265560 NIPA1Q7RTP0 329 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 TEX2Q8IWB9 1127 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 CCDC155Q8N6L0 562 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 BRI3BPQ8WY22 251 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 MS4A4AQ96JQ5 239 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 TUBGCP2Q9BSJ2 902 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 GABBR1Q9UBS5 961 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 BICDL2A1A5D9 508 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 ZNF500O60304 480 aaPredicted RBP18.27■□□□□ 0.52
USP4-201ENST00000265560 HOXD13P35453 343 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 STXBP2Q15833 593 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 PADI6Q6TGC4 694 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 MB21D1Q8N884 522 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 ZSWIM4Q9H7M6 989 aa18.27■□□□□ 0.52
USP4-201ENST00000265560 OSBPP22059 807 aa18.27■□□□□ 0.51
USP4-201ENST00000265560 YWHABP31946 246 aaKnown RBP18.27■□□□□ 0.51
USP4-201ENST00000265560 IMPACTQ9P2X3 320 aa18.27■□□□□ 0.51
USP4-201ENST00000265560 MYH11P35749 1972 aa18.26■□□□□ 0.51
USP4-201ENST00000265560 CLIC2O15247 247 aa18.26■□□□□ 0.51
USP4-201ENST00000265560 ANKRD20A12PQ8NF67 263 aa18.26■□□□□ 0.51
USP4-201ENST00000265560 CCDC43Q96MW1 224 aaKnown RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms