RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 TNRQ92752 1358 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 CCHCR1Q8TD31 782 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 NLRP4Q96MN2 994 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 FARP1Q9Y4F1 1045 aaPredicted RBP12.22□□□□□ -0.45
PTPN4-201ENST00000263708 LVRNQ6Q4G3 990 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 PYROXD1Q8WU10 500 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 TESK2Q96S53 571 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 TUBB6Q9BUF5 446 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 IQANK1A0A1B0GTG1 560 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 KLRF2D3W0D1 207 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 E7EWF7 191 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 KCTD1Q719H9 257 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 VPS39Q96JC1 886 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 EPB41L5Q9HCM4 733 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 GINM1Q9NU53 330 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 TADA3O75528 432 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 ARL4DP49703 201 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 MORF4L2Q15014 288 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 KRT24Q2M2I5 525 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 ACCSQ96QU6 501 aa12.22□□□□□ -0.45
PTPN4-201ENST00000263708 DDX28Q9NUL7 540 aaKnown RBP12.22□□□□□ -0.45
PTPN4-201ENST00000263708 DNMBPQ6XZF7 1577 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 ENC1O14682 589 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 AARSP49588 968 aaKnown RBP eCLIP12.21□□□□□ -0.45
PTPN4-201ENST00000263708 KIAA2013Q8IYS2 634 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 C6orf203Q9P0P8 240 aaPredicted RBP12.21□□□□□ -0.45
PTPN4-201ENST00000263708 ADD3Q9UEY8 706 aaKnown RBP12.21□□□□□ -0.45
PTPN4-201ENST00000263708 PFKFB1P16118 471 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 NOSTRINQ8IVI9 506 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 ZNF507Q8TCN5 953 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 JPH2Q9BR39 696 aaPredicted RBP12.21□□□□□ -0.45
PTPN4-201ENST00000263708 CTNND1O60716 968 aaKnown RBP12.21□□□□□ -0.45
PTPN4-201ENST00000263708 NR2F2P24468 414 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 ANKRD13CQ8N6S4 541 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 THOC1Q96FV9 657 aaKnown RBP12.21□□□□□ -0.45
PTPN4-201ENST00000263708 DYRK4Q9NR20 520 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 ZNF229Q9UJW7 825 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 ACAD11Q709F0 780 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 NDFIP2Q9NV92 336 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 TRAF3IP3Q9Y228 551 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 POTEB3A0JP26 581 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 ARHGAP10A1A4S6 786 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 CLIC2O15247 247 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 POTEBQ6S5H4 581 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 RGS9BPQ6ZS82 235 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 MRPL47Q9HD33 250 aaKnown RBP12.21□□□□□ -0.45
PTPN4-201ENST00000263708 MID2Q9UJV3 735 aa12.21□□□□□ -0.45
PTPN4-201ENST00000263708 FLT4P35916 1363 aa12.21□□□□□ -0.46
PTPN4-201ENST00000263708 CLRN2A0PK11 232 aa12.21□□□□□ -0.46
PTPN4-201ENST00000263708 DBNLQ9UJU6 430 aaKnown RBP12.21□□□□□ -0.46
PTPN4-201ENST00000263708 SPDYE5A6NIY4 337 aa12.21□□□□□ -0.46
PTPN4-201ENST00000263708 PSMA2P25787 234 aa12.21□□□□□ -0.46
PTPN4-201ENST00000263708 MRPS15P82914 257 aaKnown RBP12.21□□□□□ -0.46
PTPN4-201ENST00000263708 SPDYE7PQ495Y7 208 aa12.21□□□□□ -0.46
PTPN4-201ENST00000263708 CC2D2BQ6DHV5 1058 aa12.21□□□□□ -0.46
PTPN4-201ENST00000263708 MYO1DO94832 1006 aa12.21□□□□□ -0.46
PTPN4-201ENST00000263708 BAG6P46379 1132 aa12.21□□□□□ -0.46
PTPN4-201ENST00000263708 GJC2Q5T442 439 aaPredicted RBP12.21□□□□□ -0.46
PTPN4-201ENST00000263708 SCN4BQ8IWT1 228 aa12.21□□□□□ -0.46
PTPN4-201ENST00000263708 TDRD7Q8NHU6 1098 aaKnown RBP12.21□□□□□ -0.46
PTPN4-201ENST00000263708 GFPT2O94808 682 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 TEX2Q8IWB9 1127 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 ZCWPW1Q9H0M4 648 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 USP17L12C9JPN9 530 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 USP17L21D6R901 530 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 PNMA1Q8ND90 353 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 SYMPKQ92797 1274 aaKnown RBP12.2□□□□□ -0.46
PTPN4-201ENST00000263708 KDM4CQ9H3R0 1056 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 DCTPP1Q9H773 170 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 STK17AQ9UEE5 414 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 JRKLQ9Y4A0 524 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 GUCA1CO95843 209 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 PRKCQQ04759 706 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 KRT72Q14CN4 511 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 CHMP1BQ7LBR1 199 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 CEP170P1Q96L14 293 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 ADA2Q9NZK5 511 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 MAP3K10Q02779 954 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 BBS9Q3SYG4 887 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 RASSF3Q86WH2 238 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 RNF135Q8IUD6 432 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 YAF2Q8IY57 180 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 RAB42Q8N4Z0 105 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 ARMC2Q8NEN0 867 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 NPATQ14207 1427 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 A0A0G2JND7 137 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 DENND3A2RUS2 1198 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 TTC23LQ6PF05 361 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 ZNF790Q6PG37 636 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 GFAPP14136 432 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 BTDP43251 543 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 ZNF827Q17R98 1081 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 DNAJC17Q9NVM6 304 aaKnown RBP12.2□□□□□ -0.46
PTPN4-201ENST00000263708 KLHL8Q9P2G9 620 aaPredicted RBP12.2□□□□□ -0.46
PTPN4-201ENST00000263708 MAPK13O15264 365 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 ACSL3O95573 720 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 CCDC142Q17RM4 750 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 ASIC4Q96FT7 647 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 TRIM33Q9UPN9 1127 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 HDAC4P56524 1084 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms