RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 GABPB1Q06547 395 aaPredicted RBP9.42□□□□□ -0.9
PTCD3-201ENST00000254630 TMED2Q15363 201 aa9.42□□□□□ -0.9
PTCD3-201ENST00000254630 TCP11X2Q5H9J9 407 aa9.42□□□□□ -0.9
PTCD3-201ENST00000254630 ELMOD1Q8N336 334 aa9.42□□□□□ -0.9
PTCD3-201ENST00000254630 MIPOL1Q8TD10 442 aa9.42□□□□□ -0.9
PTCD3-201ENST00000254630 CCHCR1Q8TD31 782 aa9.42□□□□□ -0.9
PTCD3-201ENST00000254630 FAM149B1Q96BN6 582 aa9.42□□□□□ -0.9
PTCD3-201ENST00000254630 NARFQ9UHQ1 456 aa9.42□□□□□ -0.9
PTCD3-201ENST00000254630 SLFN14P0C7P3 912 aa9.42□□□□□ -0.9
PTCD3-201ENST00000254630 APBA1Q02410 837 aa9.42□□□□□ -0.9
PTCD3-201ENST00000254630 DPCR1Q3MIW9 517 aa9.42□□□□□ -0.9
PTCD3-201ENST00000254630 RC3H1Q5TC82 1133 aaKnown RBP9.42□□□□□ -0.9
PTCD3-201ENST00000254630 RESP18Q5W5W9 173 aa9.42□□□□□ -0.9
PTCD3-201ENST00000254630 RNF139Q8WU17 664 aa9.42□□□□□ -0.9
PTCD3-201ENST00000254630 MAGOHBQ96A72 148 aaKnown RBP9.42□□□□□ -0.9
PTCD3-201ENST00000254630 PHLPP2Q6ZVD8 1323 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 CDHR2Q9BYE9 1310 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 RBBP5Q15291 538 aaKnown RBP9.41□□□□□ -0.9
PTCD3-201ENST00000254630 STXBP2Q15833 593 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 MUM1Q2TAK8 710 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 PNMA8AQ86V59 439 aaPredicted RBP9.41□□□□□ -0.9
PTCD3-201ENST00000254630 LINC00301Q8NCQ3 95 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 TTC1Q99614 292 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 MTRQ99707 1265 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 PCDHA5Q9Y5H7 936 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 SASH1O94885 1247 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 MYCP01106 439 aaPredicted RBP9.41□□□□□ -0.9
PTCD3-201ENST00000254630 CLNS1AP54105 237 aaKnown RBP9.41□□□□□ -0.9
PTCD3-201ENST00000254630 ARMCX2Q7L311 632 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 URGCPQ8TCY9 931 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.41□□□□□ -0.9
PTCD3-201ENST00000254630 FTOQ9C0B1 505 aaKnown RBP eCLIP9.41□□□□□ -0.9
PTCD3-201ENST00000254630 ENC1O14682 589 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 CIITAP33076 1130 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 PTPN21Q16825 1174 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 ARL13BQ3SXY8 428 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 ZWILCHQ9H900 591 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 SLC8A2Q9UPR5 921 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 ZBTB5O15062 677 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 IFNAR1P17181 557 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 TBC1D10CQ8IV04 446 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 FAM71BQ8TC56 605 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 PPP1R12CQ9BZL4 782 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 IRAK4Q9NWZ3 460 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 MINPP1Q9UNW1 487 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 SOWAHDA6NJG2 315 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 WDR64B1ANS9 1081 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 LDHAP00338 332 aaKnown RBP9.41□□□□□ -0.9
PTCD3-201ENST00000254630 NT5C2P49902 561 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 CACNB3P54284 484 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 PEX3P56589 373 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 IL9RQ01113 521 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 ASPHQ12797 758 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 IQCB1Q15051 598 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 CYB5R4Q7L1T6 521 aa9.41□□□□□ -0.9
PTCD3-201ENST00000254630 MSH2P43246 934 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 GPC3P51654 580 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 PDE1BQ01064 536 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 TMTC3Q6ZXV5 915 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 RAD54LQ92698 747 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 FAM167AQ96KS9 214 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 BCL2L12Q9HB09 334 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 HOXC10Q9NYD6 342 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 LARGE1O95461 756 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 EEF2KMTQ96G04 330 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 ZNF302Q9NR11 478 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 LRRC7Q96NW7 1537 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 STK36Q9NRP7 1315 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 MXI1P50539 228 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 LRRC63Q05C16 580 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 WRNIP1Q96S55 665 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 PGRMC1O00264 195 aaKnown RBP9.4□□□□□ -0.9
PTCD3-201ENST00000254630 FTCDO95954 541 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 ASNSP08243 561 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 ELF1P32519 619 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 ARL6IP4Q66PJ3 421 aaKnown RBP9.4□□□□□ -0.9
PTCD3-201ENST00000254630 KSR1Q8IVT5 923 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 ANKRD13CQ8N6S4 541 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 MB21D1Q8N884 522 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 DNAAF3Q8N9W5 541 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 CHMP6Q96FZ7 201 aa9.4□□□□□ -0.9
PTCD3-201ENST00000254630 FAM49AQ9H0Q0 323 aaPredicted RBP9.4□□□□□ -0.9
PTCD3-201ENST00000254630 ZC3H13Q5T200 1668 aaKnown RBP9.4□□□□□ -0.91
PTCD3-201ENST00000254630 PLS3P13797 630 aa9.4□□□□□ -0.91
PTCD3-201ENST00000254630 FKBP3Q00688 224 aaKnown RBP9.4□□□□□ -0.91
PTCD3-201ENST00000254630 PFKFB3Q16875 520 aaPredicted RBP9.4□□□□□ -0.91
PTCD3-201ENST00000254630 SNRNP48Q6IEG0 339 aaKnown RBP9.4□□□□□ -0.91
PTCD3-201ENST00000254630 SPATS2Q86XZ4 545 aaKnown RBP9.4□□□□□ -0.91
PTCD3-201ENST00000254630 TRIM42Q8IWZ5 723 aa9.4□□□□□ -0.91
PTCD3-201ENST00000254630 FAM8A1Q9UBU6 413 aa9.4□□□□□ -0.91
PTCD3-201ENST00000254630 BAG2O95816 211 aa9.39□□□□□ -0.91
PTCD3-201ENST00000254630 EIF4A3P38919 411 aaKnown RBP9.39□□□□□ -0.91
PTCD3-201ENST00000254630 LIFRP42702 1097 aa9.39□□□□□ -0.91
PTCD3-201ENST00000254630 KPNA2P52292 529 aaKnown RBP9.39□□□□□ -0.91
PTCD3-201ENST00000254630 STX1BP61266 288 aa9.39□□□□□ -0.91
PTCD3-201ENST00000254630 BASP1P80723 227 aaKnown RBP9.39□□□□□ -0.91
PTCD3-201ENST00000254630 COG7P83436 770 aa9.39□□□□□ -0.91
PTCD3-201ENST00000254630 GRM4Q14833 912 aa9.39□□□□□ -0.91
PTCD3-201ENST00000254630 TMED8Q6PL24 325 aaPredicted RBP9.39□□□□□ -0.91
PTCD3-201ENST00000254630 DCLK2Q8N568 766 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms