RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	OMA1	P36163	345 aa		13.3	□□□□□ -0.28
DEP1	YAL013W	EHT1	P38295	451 aa		13.3	□□□□□ -0.28
DEP1	YAL013W	MNL1	P38888	796 aa		13.3	□□□□□ -0.28
DEP1	YAL013W	FET5	P43561	622 aa		13.3	□□□□□ -0.28
DEP1	YAL013W	RHO4	Q00246	291 aa		13.3	□□□□□ -0.28
DEP1	YAL013W	APC4	Q04601	652 aa		13.3	□□□□□ -0.28
DEP1	YAL013W	SPO77	Q06134	477 aa		13.3	□□□□□ -0.28
DEP1	YAL013W	GLO4	Q12320	285 aa		13.3	□□□□□ -0.28
DEP1	YAL013W	RHO1	P06780	209 aa	Known RBP	13.29	□□□□□ -0.28
DEP1	YAL013W	RPL1A	P0CX43	217 aa	Known RBP	13.29	□□□□□ -0.28
DEP1	YAL013W	RPL1B	P0CX44	217 aa	Known RBP	13.29	□□□□□ -0.28
DEP1	YAL013W	VPS33	P20795	691 aa		13.29	□□□□□ -0.28
DEP1	YAL013W	MSB1	P21339	1137 aa	Known RBP	13.29	□□□□□ -0.28
DEP1	YAL013W	PEP12	P32854	288 aa		13.29	□□□□□ -0.28
DEP1	YAL013W	LHP1	P33399	275 aa	Known RBP	13.29	□□□□□ -0.28
DEP1	YAL013W	RIM101	P33400	625 aa		13.29	□□□□□ -0.28
DEP1	YAL013W	FAU1	P40099	211 aa		13.29	□□□□□ -0.28
DEP1	YAL013W	DCP2	P53550	970 aa	Known RBP	13.29	□□□□□ -0.28
DEP1	YAL013W	YDL129W	Q07555	291 aa		13.29	□□□□□ -0.28
DEP1	YAL013W	LOT6	Q07923	191 aa		13.29	□□□□□ -0.28
DEP1	YAL013W	PUS7	Q08647	676 aa	Known RBP	13.29	□□□□□ -0.28
DEP1	YAL013W	RSA1	Q08932	381 aa		13.29	□□□□□ -0.28
DEP1	YAL013W	VIK1	Q12045	647 aa		13.29	□□□□□ -0.28
DEP1	YAL013W	TIM9	O74700	87 aa		13.28	□□□□□ -0.28
DEP1	YAL013W	NPR1	P22211	790 aa		13.28	□□□□□ -0.28
DEP1	YAL013W	YIM1	P28625	365 aa		13.28	□□□□□ -0.28
DEP1	YAL013W	MKK1	P32490	508 aa		13.28	□□□□□ -0.28
DEP1	YAL013W	MRPL6	P32904	214 aa		13.28	□□□□□ -0.28
DEP1	YAL013W	THO1	P40040	218 aa	Known RBP	13.28	□□□□□ -0.28
DEP1	YAL013W	YMR226C	Q05016	267 aa	Known RBP	13.28	□□□□□ -0.28
DEP1	YAL013W	RQC1	Q05468	723 aa	Known RBP	13.28	□□□□□ -0.28
DEP1	YAL013W	BNA5	Q05979	453 aa		13.28	□□□□□ -0.28
DEP1	YAL013W	RTK1	Q12100	620 aa	Predicted RBP	13.28	□□□□□ -0.28
DEP1	YAL013W	BSC1	Q12140	328 aa		13.28	□□□□□ -0.28
DEP1	YAL013W	PNO1	Q99216	274 aa	Known RBP	13.28	□□□□□ -0.28
DEP1	YAL013W	GPH1	P06738	902 aa	Known RBP	13.27	□□□□□ -0.29
DEP1	YAL013W	COR1	P07256	457 aa		13.27	□□□□□ -0.29
DEP1	YAL013W	SNF5	P18480	905 aa		13.27	□□□□□ -0.29
DEP1	YAL013W	ARE1	P25628	610 aa		13.27	□□□□□ -0.29
DEP1	YAL013W	UBC8	P28263	218 aa		13.27	□□□□□ -0.29
DEP1	YAL013W	PTP2	P29461	750 aa		13.27	□□□□□ -0.29
DEP1	YAL013W	YMC1	P32331	307 aa		13.27	□□□□□ -0.29
DEP1	YAL013W	YBR285W	P38354	144 aa		13.27	□□□□□ -0.29
DEP1	YAL013W	MTG2	P38860	518 aa		13.27	□□□□□ -0.29
DEP1	YAL013W	PDS1	P40316	373 aa	Predicted RBP	13.27	□□□□□ -0.29
DEP1	YAL013W	LYS12	P40495	371 aa	Known RBP	13.27	□□□□□ -0.29
DEP1	YAL013W	UBC9	P50623	157 aa	Predicted RBP	13.27	□□□□□ -0.29
DEP1	YAL013W	GRR1	P24814	1151 aa		13.26	□□□□□ -0.29
DEP1	YAL013W	TAH1	P25638	111 aa	Predicted RBP	13.26	□□□□□ -0.29
DEP1	YAL013W	CYS4	P32582	507 aa	Known RBP	13.26	□□□□□ -0.29
DEP1	YAL013W	HCS1	P34243	683 aa		13.26	□□□□□ -0.29
DEP1	YAL013W	RPL10	P41805	221 aa	Known RBP	13.26	□□□□□ -0.29
DEP1	YAL013W	RIM21	P48565	533 aa		13.26	□□□□□ -0.29
DEP1	YAL013W	YGR079W	P53249	370 aa		13.26	□□□□□ -0.29
DEP1	YAL013W	ATF2	P53296	535 aa		13.26	□□□□□ -0.29
DEP1	YAL013W	SED5	Q01590	340 aa		13.26	□□□□□ -0.29
DEP1	YAL013W	DTD1	Q07648	150 aa	Known RBP	13.26	□□□□□ -0.29
DEP1	YAL013W	HTS1	P07263	546 aa	Known RBP	13.25	□□□□□ -0.29
DEP1	YAL013W	RPC82	P32349	654 aa		13.25	□□□□□ -0.29
DEP1	YAL013W	HOG1	P32485	435 aa		13.25	□□□□□ -0.29
DEP1	YAL013W	YJL068C	P40363	299 aa		13.25	□□□□□ -0.29
DEP1	YAL013W	YRB2	P40517	327 aa		13.25	□□□□□ -0.29
DEP1	YAL013W	TED1	P40533	473 aa		13.25	□□□□□ -0.29
DEP1	YAL013W	HOC1	P47124	396 aa		13.25	□□□□□ -0.29
DEP1	YAL013W	REC102	Q02721	264 aa		13.25	□□□□□ -0.29
DEP1	YAL013W	YMR099C	Q03161	297 aa	Known RBP	13.25	□□□□□ -0.29
DEP1	YAL013W	FAR1	P21268	830 aa		13.24	□□□□□ -0.29
DEP1	YAL013W	CTR86	P25355	563 aa		13.24	□□□□□ -0.29
DEP1	YAL013W	CWP1	P28319	239 aa		13.24	□□□□□ -0.29
DEP1	YAL013W	YGR201C	P42936	225 aa		13.24	□□□□□ -0.29
DEP1	YAL013W	STE24	P47154	453 aa		13.24	□□□□□ -0.29
DEP1	YAL013W	CDH1	P53197	566 aa		13.24	□□□□□ -0.29
DEP1	YAL013W	YLR030W	Q07967	263 aa		13.24	□□□□□ -0.29
DEP1	YAL013W	SFM1	Q12314	213 aa		13.24	□□□□□ -0.29
DEP1	YAL013W	TSC13	Q99190	310 aa		13.24	□□□□□ -0.29
DEP1	YAL013W	RIB3	Q99258	208 aa		13.24	□□□□□ -0.29
DEP1	YAL013W	MF(ALPHA)1	P01149	165 aa		13.23	□□□□□ -0.29
DEP1	YAL013W	CDC4	P07834	779 aa		13.23	□□□□□ -0.29
DEP1	YAL013W	ZWF1	P11412	505 aa	Known RBP	13.23	□□□□□ -0.29
DEP1	YAL013W	CHA1	P25379	360 aa	Known RBP	13.23	□□□□□ -0.29
DEP1	YAL013W	SAC1	P32368	623 aa	Known RBP	13.23	□□□□□ -0.29
DEP1	YAL013W	LOT5	P34234	306 aa		13.23	□□□□□ -0.29
DEP1	YAL013W	ZTA1	P38230	334 aa	Known RBP	13.23	□□□□□ -0.29
DEP1	YAL013W	FAR7	P43592	221 aa		13.23	□□□□□ -0.29
DEP1	YAL013W	HOS2	P53096	452 aa	Predicted RBP	13.23	□□□□□ -0.29
DEP1	YAL013W	RSF1	Q05043	376 aa		13.23	□□□□□ -0.29
DEP1	YAL013W	ARO10	Q06408	635 aa		13.23	□□□□□ -0.29
DEP1	YAL013W	YKL033W-A	Q86ZR7	236 aa		13.23	□□□□□ -0.29
DEP1	YAL013W	HOP1	P20050	605 aa		13.22	□□□□□ -0.29
DEP1	YAL013W	YRO2	P38079	344 aa		13.22	□□□□□ -0.29
DEP1	YAL013W	PRP39	P39682	629 aa	Known RBP	13.22	□□□□□ -0.29
DEP1	YAL013W	OPT2	Q06593	877 aa		13.22	□□□□□ -0.29
DEP1	YAL013W	SEC39	Q12745	709 aa		13.22	□□□□□ -0.29
DEP1	YAL013W	GSH1	P32477	678 aa		13.21	□□□□□ -0.29
DEP1	YAL013W	TIF3	P34167	436 aa	Known RBP	13.21	□□□□□ -0.29
DEP1	YAL013W	TUL1	P36096	758 aa		13.21	□□□□□ -0.29
DEP1	YAL013W	ECM8	P38246	354 aa		13.21	□□□□□ -0.29
DEP1	YAL013W	MPH1	P40562	993 aa		13.21	□□□□□ -0.29
DEP1	YAL013W	IBA57	P47158	497 aa		13.21	□□□□□ -0.29
DEP1	YAL013W	DAM1	P53267	343 aa		13.21	□□□□□ -0.29

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