RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 MFSD10Q14728 455 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 INF2Q27J81 1249 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 KIAA0753Q2KHM9 967 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 EARS2Q5JPH6 523 aaKnown RBP11.18□□□□□ -0.62
CLN3-261ENST00000637686 UTP14CQ5TAP6 766 aaKnown RBP11.18□□□□□ -0.62
CLN3-261ENST00000637686 PIK3AP1Q6ZUJ8 805 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 SPRYD3Q8NCJ5 442 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 SEPT1Q8WYJ6 367 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 LENG9Q96B70 501 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 C8orf76Q96K31 380 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 ZNF577Q9BSK1 485 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 ZSCAN16Q9H4T2 348 aaPredicted RBP11.18□□□□□ -0.62
CLN3-261ENST00000637686 BRMS1Q9HCU9 246 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 JPH1Q9HDC5 661 aaPredicted RBP11.18□□□□□ -0.62
CLN3-261ENST00000637686 FOXD4L1Q9NU39 408 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 SLC9A2Q9UBY0 812 aa11.18□□□□□ -0.62
CLN3-261ENST00000637686 TCHHQ07283 1943 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 BTBD18B2RXH4 712 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 H3BQV1 296 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 H3BRB1 525 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 IPO5O00410 1097 aaKnown RBP11.17□□□□□ -0.62
CLN3-261ENST00000637686 MSH4O15457 936 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 TDP2O95551 362 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 ZSCAN22P10073 491 aaPredicted RBP11.17□□□□□ -0.62
CLN3-261ENST00000637686 RAG1P15918 1043 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 TCF7P36402 384 aaPredicted RBP11.17□□□□□ -0.62
CLN3-261ENST00000637686 PTPN11Q06124 597 aaPredicted RBP11.17□□□□□ -0.62
CLN3-261ENST00000637686 LETM2Q2VYF4 491 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 GDF6Q6KF10 455 aaPredicted RBP11.17□□□□□ -0.62
CLN3-261ENST00000637686 SESTD1Q86VW0 696 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 TRIM50Q86XT4 487 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 DIS3L2Q8IYB7 885 aaKnown RBP11.17□□□□□ -0.62
CLN3-261ENST00000637686 C7orf31Q8N865 590 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 BADQ92934 168 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 TNFRSF25Q93038 417 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 GDF15Q99988 308 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 LBHD1Q9BQE6 289 aaPredicted RBP11.17□□□□□ -0.62
CLN3-261ENST00000637686 TUT1Q9H6E5 874 aaKnown RBP11.17□□□□□ -0.62
CLN3-261ENST00000637686 HDAC6Q9UBN7 1215 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 TBX21Q9UL17 535 aa11.17□□□□□ -0.62
CLN3-261ENST00000637686 COLQQ9Y215 455 aaPredicted RBP11.17□□□□□ -0.62
CLN3-261ENST00000637686 CYP3A7-CYP3A51PA0A087WV96 503 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 FAM205CA6NFA0 338 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 DHX15O43143 795 aaKnown RBP11.16□□□□□ -0.62
CLN3-261ENST00000637686 CCNE2O96020 404 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 F13A1P00488 732 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 TIMP1P01033 207 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 SUPT20HL2P0C7V6 817 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 CYP2C9P11712 490 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 CYP3A7P24462 503 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 ACTR2P61160 394 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 SAFBQ15424 915 aaKnown RBP eCLIP11.16□□□□□ -0.62
CLN3-261ENST00000637686 Q4G0T1 1027 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 ATL3Q6DD88 541 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 BRAPQ7Z569 592 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 NEK8Q86SG6 692 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 PPP1R12CQ9BZL4 782 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 ZDHHC9Q9Y397 364 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 CEP290O15078 2479 aa11.16□□□□□ -0.62
CLN3-261ENST00000637686 SLC37A4O43826 429 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 CCNT1O60563 726 aaKnown RBP11.15□□□□□ -0.62
CLN3-261ENST00000637686 SLC34A2O95436 690 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 U2AF2P26368 475 aaKnown RBP eCLIP11.15□□□□□ -0.62
CLN3-261ENST00000637686 MARK3P27448 753 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 BMP8BP34820 402 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 ZNF200P98182 395 aaPredicted RBP11.15□□□□□ -0.62
CLN3-261ENST00000637686 HIC1Q14526 733 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 PTGISQ16647 500 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 MOXD1Q6UVY6 613 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 GLG1Q92896 1179 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 GJA10Q969M2 543 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 MBOAT7Q96N66 472 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 PCYT2Q99447 389 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 UBE2OQ9C0C9 1292 aaKnown RBP11.15□□□□□ -0.62
CLN3-261ENST00000637686 FOXP1Q9H334 677 aaPredicted RBP11.15□□□□□ -0.62
CLN3-261ENST00000637686 PRO3102Q9H379 93 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 HIPK3Q9H422 1215 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 RNPEPQ9H4A4 650 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 SMARCAD1Q9H4L7 1026 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 TBC1D22BQ9NU19 505 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 DDX25Q9UHL0 483 aaKnown RBP11.15□□□□□ -0.62
CLN3-261ENST00000637686 GTF2IRD1Q9UHL9 959 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 ZNF215Q9UL58 517 aaPredicted RBP11.15□□□□□ -0.62
CLN3-261ENST00000637686 NOD1Q9Y239 953 aa11.15□□□□□ -0.62
CLN3-261ENST00000637686 LTBP2Q14767 1821 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 UMODL1Q5DID0 1318 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 C17orf102A2RUQ5 167 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 VPS37CA5D8V6 355 aaPredicted RBP11.14□□□□□ -0.63
CLN3-261ENST00000637686 LGR5O75473 907 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 ATG7O95352 703 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 SMIM10L2AP0DMW4 78 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 SMIM10L2BP0DMW5 78 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 CYP2C18P33260 490 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 PPP4R3AQ6IN85 833 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 MFSD5Q6N075 450 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 ZNF746Q6NUN9 644 aaPredicted RBP11.14□□□□□ -0.63
CLN3-261ENST00000637686 MIS18BP1Q6P0N0 1132 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 SLC5A5Q92911 643 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 CTAGE1Q96RT6 745 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 NOC4LQ9BVI4 516 aaKnown RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms