RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 MFSD10Q14728 455 aa20.73■□□□□ 0.91
CLN3-259ENST00000637551 ZNF746Q6NUN9 644 aaPredicted RBP20.73■□□□□ 0.91
CLN3-259ENST00000637551 TDHQ8IZJ6 230 aa20.73■□□□□ 0.91
CLN3-259ENST00000637551 RDM1Q8NG50 284 aa20.73■□□□□ 0.91
CLN3-259ENST00000637551 C8orf76Q96K31 380 aa20.73■□□□□ 0.91
CLN3-259ENST00000637551 FOXP1Q9H334 677 aaPredicted RBP20.73■□□□□ 0.91
CLN3-259ENST00000637551 TUT1Q9H6E5 874 aaKnown RBP20.73■□□□□ 0.91
CLN3-259ENST00000637551 GTF2IRD1Q9UHL9 959 aa20.73■□□□□ 0.91
CLN3-259ENST00000637551 ZMYND8Q9ULU4 1186 aaPredicted RBP20.73■□□□□ 0.91
CLN3-259ENST00000637551 PITPNM1O00562 1244 aa20.72■□□□□ 0.91
CLN3-259ENST00000637551 ADAMTS3O15072 1205 aa20.72■□□□□ 0.91
CLN3-259ENST00000637551 RPLP2P05387 115 aaKnown RBP20.72■□□□□ 0.91
CLN3-259ENST00000637551 ARP10275 920 aa20.72■□□□□ 0.91
CLN3-259ENST00000637551 PSEN2P49810 448 aa20.72■□□□□ 0.91
CLN3-259ENST00000637551 RBL2Q08999 1139 aa20.72■□□□□ 0.91
CLN3-259ENST00000637551 ITGB3BPQ13352 177 aaPredicted RBP20.72■□□□□ 0.91
CLN3-259ENST00000637551 KIAA0753Q2KHM9 967 aa20.72■□□□□ 0.91
CLN3-259ENST00000637551 PRR16Q569H4 304 aa20.72■□□□□ 0.91
CLN3-259ENST00000637551 DIS3L2Q8IYB7 885 aaKnown RBP20.72■□□□□ 0.91
CLN3-259ENST00000637551 ZFP91Q96JP5 570 aaPredicted RBP20.72■□□□□ 0.91
CLN3-259ENST00000637551 LBHD1Q9BQE6 289 aaPredicted RBP20.72■□□□□ 0.91
CLN3-259ENST00000637551 ZNF577Q9BSK1 485 aa20.72■□□□□ 0.91
CLN3-259ENST00000637551 SMARCAD1Q9H4L7 1026 aa20.72■□□□□ 0.91
CLN3-259ENST00000637551 TMEM39AQ9NV64 488 aa20.72■□□□□ 0.91
CLN3-259ENST00000637551 MYH9P35579 1960 aaKnown RBP20.72■□□□□ 0.91
CLN3-259ENST00000637551 WDR81Q562E7 1941 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 IGKV6D-21A0A0A0MT36 114 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 DHX15O43143 795 aaKnown RBP20.71■□□□□ 0.91
CLN3-259ENST00000637551 EDIL3O43854 480 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 GNAT1P11488 350 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 TCF7P36402 384 aaPredicted RBP20.71■□□□□ 0.91
CLN3-259ENST00000637551 PSMC6P62333 389 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 CUL4AQ13619 759 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 PLPPR4Q7Z2D5 763 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 CCDC155Q8N6L0 562 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 C7orf31Q8N865 590 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 CAGE1Q8TC20 777 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 AFAP1L1Q8TED9 768 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 SLC5A5Q92911 643 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 FAM20AQ96MK3 541 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 ERAP1Q9NZ08 941 aa20.71■□□□□ 0.91
CLN3-259ENST00000637551 B4GALT4O60513 344 aa20.7■□□□□ 0.9
CLN3-259ENST00000637551 CD2BP2O95400 341 aaKnown RBP20.7■□□□□ 0.9
CLN3-259ENST00000637551 PARNO95453 639 aaKnown RBP20.7■□□□□ 0.9
CLN3-259ENST00000637551 TIMP1P01033 207 aa20.7■□□□□ 0.9
CLN3-259ENST00000637551 ZNF286BP0CG31 522 aa20.7■□□□□ 0.9
CLN3-259ENST00000637551 SFNP31947 248 aa20.7■□□□□ 0.9
CLN3-259ENST00000637551 MAGEA10P43363 369 aaPredicted RBP20.7■□□□□ 0.9
CLN3-259ENST00000637551 TRAPPC10P48553 1259 aa20.7■□□□□ 0.9
CLN3-259ENST00000637551 ACTR2P61160 394 aa20.7■□□□□ 0.9
CLN3-259ENST00000637551 SNX21Q969T3 373 aa20.7■□□□□ 0.9
CLN3-259ENST00000637551 INTS4Q96HW7 963 aaKnown RBP20.7■□□□□ 0.9
CLN3-259ENST00000637551 AZI2Q9H6S1 392 aa20.7■□□□□ 0.9
CLN3-259ENST00000637551 TANC1Q9C0D5 1861 aa20.7■□□□□ 0.9
CLN3-259ENST00000637551 SPTBN5Q9NRC6 3674 aaKnown RBP20.7■□□□□ 0.9
CLN3-259ENST00000637551 GSTTP1A0A1W2PQM5 241 aa20.69■□□□□ 0.9
CLN3-259ENST00000637551 CAND2O75155 1236 aa20.69■□□□□ 0.9
CLN3-259ENST00000637551 RAG1P15918 1043 aa20.69■□□□□ 0.9
CLN3-259ENST00000637551 INF2Q27J81 1249 aa20.69■□□□□ 0.9
CLN3-259ENST00000637551 PIK3AP1Q6ZUJ8 805 aa20.69■□□□□ 0.9
CLN3-259ENST00000637551 KCNMB3Q9NPA1 279 aa20.69■□□□□ 0.9
CLN3-259ENST00000637551 DDX25Q9UHL0 483 aaKnown RBP20.69■□□□□ 0.9
CLN3-259ENST00000637551 NRCAMQ92823 1304 aa20.69■□□□□ 0.9
CLN3-259ENST00000637551 TRIM43BA6NCK2 446 aa20.68■□□□□ 0.9
CLN3-259ENST00000637551 MSH4O15457 936 aa20.68■□□□□ 0.9
CLN3-259ENST00000637551 U2AF2P26368 475 aaKnown RBP eCLIP20.68■□□□□ 0.9
CLN3-259ENST00000637551 JAK3P52333 1124 aa20.68■□□□□ 0.9
CLN3-259ENST00000637551 BFSP2Q13515 415 aa20.68■□□□□ 0.9
CLN3-259ENST00000637551 FAM160B1Q5W0V3 765 aa20.68■□□□□ 0.9
CLN3-259ENST00000637551 MFSD5Q6N075 450 aa20.68■□□□□ 0.9
CLN3-259ENST00000637551 MIS18BP1Q6P0N0 1132 aa20.68■□□□□ 0.9
CLN3-259ENST00000637551 ETNPPLQ8TBG4 499 aa20.68■□□□□ 0.9
CLN3-259ENST00000637551 OXER1Q8TDS5 423 aa20.68■□□□□ 0.9
CLN3-259ENST00000637551 TRIM43Q96BQ3 446 aaPredicted RBP20.68■□□□□ 0.9
CLN3-259ENST00000637551 GJB4Q9NTQ9 266 aa20.68■□□□□ 0.9
CLN3-259ENST00000637551 WDR64B1ANS9 1081 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 BTBD18B2RXH4 712 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 PSMD10O75832 226 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 PFKMP08237 780 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 SYN1P17600 705 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 RFC2P35250 354 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 NR5A1Q13285 461 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 PTK7Q13308 1070 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 FAM47CQ5HY64 1035 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 B3GNT9Q6UX72 402 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 ABHD15Q6UXT9 468 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 SLFN12Q8IYM2 578 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 NOC4LQ9BVI4 516 aaKnown RBP20.67■□□□□ 0.9
CLN3-259ENST00000637551 HIPK3Q9H422 1215 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 BCAS3Q9H6U6 928 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 PRDM5Q9NQX1 630 aaPredicted RBP20.67■□□□□ 0.9
CLN3-259ENST00000637551 PCDHA10Q9Y5I2 948 aa20.67■□□□□ 0.9
CLN3-259ENST00000637551 LAMA2P24043 3122 aaKnown RBP20.67■□□□□ 0.9
CLN3-259ENST00000637551 GAS7O60861 476 aa20.66■□□□□ 0.9
CLN3-259ENST00000637551 PDIA4P13667 645 aaKnown RBP20.66■□□□□ 0.9
CLN3-259ENST00000637551 PDCP20941 246 aa20.66■□□□□ 0.9
CLN3-259ENST00000637551 PTGISQ16647 500 aa20.66■□□□□ 0.9
CLN3-259ENST00000637551 LETM2Q2VYF4 491 aa20.66■□□□□ 0.9
CLN3-259ENST00000637551 LRCH2Q5VUJ6 765 aa20.66■□□□□ 0.9
CLN3-259ENST00000637551 FAM43BQ6ZT52 329 aaPredicted RBP20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms