RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 CASC1Q6TDU7 716 aa20.57■□□□□ 0.88
CIITA-215ENST00000637439 RPAINQ86UA6 219 aa20.57■□□□□ 0.88
CIITA-215ENST00000637439 TRIM50Q86XT4 487 aa20.57■□□□□ 0.88
CIITA-215ENST00000637439 TMEM192Q8IY95 271 aa20.57■□□□□ 0.88
CIITA-215ENST00000637439 MB21D2Q8IYB1 491 aaPredicted RBP20.57■□□□□ 0.88
CIITA-215ENST00000637439 ZNF654Q8IZM8 581 aa20.57■□□□□ 0.88
CIITA-215ENST00000637439 TMTC2Q8N394 836 aa20.57■□□□□ 0.88
CIITA-215ENST00000637439 MAP4K1Q92918 833 aa20.57■□□□□ 0.88
CIITA-215ENST00000637439 TAF6LQ9Y6J9 622 aa20.57■□□□□ 0.88
CIITA-215ENST00000637439 KAT6AQ92794 2004 aa20.56■□□□□ 0.88
CIITA-215ENST00000637439 PI4K2BG5E9Z4 385 aa20.56■□□□□ 0.88
CIITA-215ENST00000637439 MEIS2O14770 477 aa20.56■□□□□ 0.88
CIITA-215ENST00000637439 SP4Q02446 784 aa20.56■□□□□ 0.88
CIITA-215ENST00000637439 GPM6BQ13491 265 aa20.56■□□□□ 0.88
CIITA-215ENST00000637439 TAF2Q6P1X5 1199 aa20.56■□□□□ 0.88
CIITA-215ENST00000637439 FAM178BQ8IXR5 827 aa20.56■□□□□ 0.88
CIITA-215ENST00000637439 BANK1Q8NDB2 785 aa20.56■□□□□ 0.88
CIITA-215ENST00000637439 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.56■□□□□ 0.88
CIITA-215ENST00000637439 GPRASP2Q96D09 838 aa20.56■□□□□ 0.88
CIITA-215ENST00000637439 LY9Q9HBG7 655 aa20.56■□□□□ 0.88
CIITA-215ENST00000637439 TCF7P36402 384 aaPredicted RBP20.55■□□□□ 0.88
CIITA-215ENST00000637439 PTCRAQ6ISU1 281 aaPredicted RBP20.55■□□□□ 0.88
CIITA-215ENST00000637439 RSPH3Q86UC2 560 aa20.55■□□□□ 0.88
CIITA-215ENST00000637439 IL17RAQ96F46 866 aa20.55■□□□□ 0.88
CIITA-215ENST00000637439 OSBPL7Q9BZF2 842 aa20.55■□□□□ 0.88
CIITA-215ENST00000637439 RALGAPA2Q2PPJ7 1873 aa20.55■□□□□ 0.88
CIITA-215ENST00000637439 NLRC5Q86WI3 1866 aa20.55■□□□□ 0.88
CIITA-215ENST00000637439 CALM1P0DP23 149 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 CALM2P0DP24 149 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 CALM3P0DP25 149 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 NFXL1Q6ZNB6 911 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 GJD3Q8N144 294 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 FIBCD1Q8N539 461 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 NEK9Q8TD19 979 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 SEPT1Q8WYJ6 367 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 KHSRPQ92945 711 aaKnown RBP eCLIP20.54■□□□□ 0.88
CIITA-215ENST00000637439 TMEM87BQ96K49 555 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 PSTPIP2Q9H939 334 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 CD320Q9NPF0 282 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 ERAP1Q9NZ08 941 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 FAM50BQ9Y247 325 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 RWDD3Q9Y3V2 267 aa20.54■□□□□ 0.88
CIITA-215ENST00000637439 RBM8AQ9Y5S9 174 aaKnown RBP20.54■□□□□ 0.88
CIITA-215ENST00000637439 GRXCR2A6NFK2 248 aa20.53■□□□□ 0.88
CIITA-215ENST00000637439 CCDC69A6NI79 296 aa20.53■□□□□ 0.88
CIITA-215ENST00000637439 CHRNA1P02708 482 aa20.53■□□□□ 0.88
CIITA-215ENST00000637439 RPLP2P05387 115 aaKnown RBP20.53■□□□□ 0.88
CIITA-215ENST00000637439 RB1P06400 928 aa20.53■□□□□ 0.88
CIITA-215ENST00000637439 MCM5P33992 734 aa20.53■□□□□ 0.88
CIITA-215ENST00000637439 PABPC5Q96DU9 382 aaKnown RBP20.53■□□□□ 0.88
CIITA-215ENST00000637439 MYL10Q9BUA6 226 aa20.53■□□□□ 0.88
CIITA-215ENST00000637439 NSUN3Q9H649 340 aaKnown RBP20.53■□□□□ 0.88
CIITA-215ENST00000637439 EHMT1Q9H9B1 1298 aa20.53■□□□□ 0.88
CIITA-215ENST00000637439 TELO2Q9Y4R8 837 aa20.53■□□□□ 0.88
CIITA-215ENST00000637439 RBAK-RBAKDNI3L0D1 243 aa20.52■□□□□ 0.88
CIITA-215ENST00000637439 MAFGO15525 162 aa20.52■□□□□ 0.88
CIITA-215ENST00000637439 NCK2O43639 380 aa20.52■□□□□ 0.88
CIITA-215ENST00000637439 PRC1O43663 620 aa20.52■□□□□ 0.88
CIITA-215ENST00000637439 KCNA2P16389 499 aa20.52■□□□□ 0.88
CIITA-215ENST00000637439 SSTR3P32745 418 aaPredicted RBP20.52■□□□□ 0.88
CIITA-215ENST00000637439 PPFIA1Q13136 1202 aa20.52■□□□□ 0.88
CIITA-215ENST00000637439 SMARCAD1Q9H4L7 1026 aa20.52■□□□□ 0.88
CIITA-215ENST00000637439 C5orf67F2Z3F1 127 aa20.51■□□□□ 0.87
CIITA-215ENST00000637439 ATP9AO75110 1047 aa20.51■□□□□ 0.87
CIITA-215ENST00000637439 GHRP10912 638 aa20.51■□□□□ 0.87
CIITA-215ENST00000637439 IL9P15248 144 aa20.51■□□□□ 0.87
CIITA-215ENST00000637439 MTMR1Q13613 665 aa20.51■□□□□ 0.87
CIITA-215ENST00000637439 TCEAL5Q5H9L2 206 aa20.51■□□□□ 0.87
CIITA-215ENST00000637439 SRBD1Q8N5C6 995 aaKnown RBP20.51■□□□□ 0.87
CIITA-215ENST00000637439 GLG1Q92896 1179 aa20.51■□□□□ 0.87
CIITA-215ENST00000637439 TNPO1Q92973 898 aaKnown RBP20.51■□□□□ 0.87
CIITA-215ENST00000637439 C11orf84Q9BUA3 381 aaPredicted RBP20.51■□□□□ 0.87
CIITA-215ENST00000637439 LMAN2LQ9H0V9 348 aa20.51■□□□□ 0.87
CIITA-215ENST00000637439 C11orf16Q9NQ32 467 aa20.51■□□□□ 0.87
CIITA-215ENST00000637439 TUBE1Q9UJT0 475 aa20.51■□□□□ 0.87
CIITA-215ENST00000637439 GSTTP1A0A1W2PQM5 241 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 SPDYE3A6NKU9 549 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 PLEKHA8P1O95397 391 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 ALADP13716 330 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 ITGB5P18084 799 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 CTNNB1P35222 781 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 LIFRP42702 1097 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 MGAT3Q09327 533 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 LPIN1Q14693 890 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 COL19A1Q14993 1142 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 GRIK4Q16099 956 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 RUFY4Q6ZNE9 571 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 UBIAD1Q9Y5Z9 338 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 ADGRA3Q8IWK6 1321 aa20.5■□□□□ 0.87
CIITA-215ENST00000637439 MBLAC1A4D2B0 266 aaPredicted RBP20.49■□□□□ 0.87
CIITA-215ENST00000637439 RRN3P2A6NIE6 340 aa20.49■□□□□ 0.87
CIITA-215ENST00000637439 H3BQ06 376 aaPredicted RBP20.49■□□□□ 0.87
CIITA-215ENST00000637439 SH2B2O14492 632 aaPredicted RBP20.49■□□□□ 0.87
CIITA-215ENST00000637439 BMPR1AP36894 532 aa20.49■□□□□ 0.87
CIITA-215ENST00000637439 EP400NLQ6ZTU2 488 aa20.49■□□□□ 0.87
CIITA-215ENST00000637439 PRKAG3Q9UGI9 489 aa20.49■□□□□ 0.87
CIITA-215ENST00000637439 SUPT16HQ9Y5B9 1047 aaKnown RBP20.49■□□□□ 0.87
CIITA-215ENST00000637439 FAM86C2PA6NEL3 165 aa20.48■□□□□ 0.87
CIITA-215ENST00000637439 PRR33A8MZF0 331 aa20.48■□□□□ 0.87
CIITA-215ENST00000637439 ENPP3O14638 875 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms