RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 UBIAD1Q9Y5Z9 338 aa14.41□□□□□ -0.1
PNKP-217ENST00000625216 SMCO2A6NFE2 343 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 STXBP3O00186 592 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 STX6O43752 255 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 CDKL5O76039 1030 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 LGALS2P05162 132 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 GNAT1P11488 350 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 SELPP16109 830 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 ITGB5P18084 799 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 ADCY7P51828 1080 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 FOSBP53539 338 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 AP3B2Q13367 1082 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 MTMR1Q13613 665 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 PFKFB3Q16875 520 aaPredicted RBP14.4□□□□□ -0.1
PNKP-217ENST00000625216 CPLX2Q6PUV4 134 aaKnown RBP14.4□□□□□ -0.1
PNKP-217ENST00000625216 DEFB128Q7Z7B8 93 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 CCDC12Q8WUD4 166 aaPredicted RBP14.4□□□□□ -0.1
PNKP-217ENST00000625216 PBX4Q9BYU1 374 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 FTOQ9C0B1 505 aaKnown RBP eCLIP14.4□□□□□ -0.1
PNKP-217ENST00000625216 BCAS3Q9H6U6 928 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 ZNF215Q9UL58 517 aaPredicted RBP14.4□□□□□ -0.1
PNKP-217ENST00000625216 MTMR6Q9Y217 621 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 KIAA1217Q5T5P2 1943 aa14.4□□□□□ -0.1
PNKP-217ENST00000625216 C17orf102A2RUQ5 167 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 ZBBXA8MT70 800 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 GRXCR1A8MXD5 290 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 PRPF3O43395 683 aaKnown RBP14.39□□□□□ -0.11
PNKP-217ENST00000625216 CKBP12277 381 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 SCG2P13521 617 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 KCNA2P16389 499 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 FOXD4L5Q5VV16 416 aaPredicted RBP14.39□□□□□ -0.11
PNKP-217ENST00000625216 LARP1BQ659C4 914 aaKnown RBP14.39□□□□□ -0.11
PNKP-217ENST00000625216 TYW1BQ6NUM6 668 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 LRRC8DQ7L1W4 858 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 FAM184AQ8NB25 1140 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 SLC17A8Q8NDX2 589 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 PHOSPHO2Q8TCD6 241 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 FOXD4L4Q8WXT5 416 aaPredicted RBP14.39□□□□□ -0.11
PNKP-217ENST00000625216 SEPT1Q8WYJ6 367 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 DHX38Q92620 1227 aaKnown RBP14.39□□□□□ -0.11
PNKP-217ENST00000625216 TNPO1Q92973 898 aaKnown RBP14.39□□□□□ -0.11
PNKP-217ENST00000625216 AIFM3Q96NN9 605 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 MXRA8Q9BRK3 442 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 SLC26A6Q9BXS9 759 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 ZNF576Q9H609 170 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 COL6A3P12111 3177 aa14.39□□□□□ -0.11
PNKP-217ENST00000625216 ESYT2A0FGR8 921 aa14.38□□□□□ -0.11
PNKP-217ENST00000625216 VPS37CA5D8V6 355 aaPredicted RBP14.38□□□□□ -0.11
PNKP-217ENST00000625216 ATP9AO75110 1047 aa14.38□□□□□ -0.11
PNKP-217ENST00000625216 BAIAP3O94812 1187 aa14.38□□□□□ -0.11
PNKP-217ENST00000625216 ATP2A2P16615 1042 aaKnown RBP14.38□□□□□ -0.11
PNKP-217ENST00000625216 HOXC8P31273 242 aa14.38□□□□□ -0.11
PNKP-217ENST00000625216 AKAP17AQ02040 695 aaKnown RBP14.38□□□□□ -0.11
PNKP-217ENST00000625216 SERINC5Q86VE9 423 aa14.38□□□□□ -0.11
PNKP-217ENST00000625216 CAND2O75155 1236 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 CXCL10P02778 98 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 SMIM10L2AP0DMW4 78 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 SMIM10L2BP0DMW5 78 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 ZSCAN22P10073 491 aaPredicted RBP14.37□□□□□ -0.11
PNKP-217ENST00000625216 PDCP20941 246 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 SREBF1P36956 1147 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 PBX2P40425 430 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 CLK2P49760 499 aaKnown RBP14.37□□□□□ -0.11
PNKP-217ENST00000625216 ZNF200P98182 395 aaPredicted RBP14.37□□□□□ -0.11
PNKP-217ENST00000625216 SSRP1Q08945 709 aaKnown RBP14.37□□□□□ -0.11
PNKP-217ENST00000625216 TRIM71Q2Q1W2 868 aaKnown RBP14.37□□□□□ -0.11
PNKP-217ENST00000625216 CEP55Q53EZ4 464 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 ATP6V0A1Q93050 837 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 SLC9A7Q96T83 725 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 RNF26Q9BY78 433 aaPredicted RBP14.37□□□□□ -0.11
PNKP-217ENST00000625216 ANO3Q9BYT9 981 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 ZMYND12Q9H0C1 365 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 RNPEPQ9H4A4 650 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 SLC28A3Q9HAS3 691 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 C6orf50Q9HD87 102 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 KCNH7Q9NS40 1196 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 KIF3AQ9Y496 699 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 PCDHA11Q9Y5I1 949 aa14.37□□□□□ -0.11
PNKP-217ENST00000625216 MEIS1O00470 390 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 EFCAB14O75071 495 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 F13A1P00488 732 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 GNA11P29992 359 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 TCF7P36402 384 aaPredicted RBP14.36□□□□□ -0.11
PNKP-217ENST00000625216 SP4Q02446 784 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 GPNMBQ14956 572 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 GRIN2CQ14957 1233 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 UTP14CQ5TAP6 766 aaKnown RBP14.36□□□□□ -0.11
PNKP-217ENST00000625216 CNKSR3Q6P9H4 555 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 NIPA1Q7RTP0 329 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 MYLIPQ8WY64 445 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 SMARCAD1Q9H4L7 1026 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 GJB4Q9NTQ9 266 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 NFASCO94856 1347 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 EMSYQ7Z589 1322 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 NRCAMQ92823 1304 aa14.36□□□□□ -0.11
PNKP-217ENST00000625216 ABHD14A-ACY1A0A1B0GW23 586 aa14.35□□□□□ -0.11
PNKP-217ENST00000625216 GSTTP1A0A1W2PQM5 241 aa14.35□□□□□ -0.11
PNKP-217ENST00000625216 KIF28PB7ZC32 967 aa14.35□□□□□ -0.11
PNKP-217ENST00000625216 DEXIO95424 95 aa14.35□□□□□ -0.11
PNKP-217ENST00000625216 FOSL2P15408 326 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms