RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 NFIBO00712 420 aa23.59■■□□□ 1.37
LIME1-210ENST00000621325 ICAM1P05362 532 aa23.59■■□□□ 1.37
LIME1-210ENST00000621325 ARP10275 920 aa23.59■■□□□ 1.37
LIME1-210ENST00000621325 CASQ1P31415 396 aa23.59■■□□□ 1.37
LIME1-210ENST00000621325 CEP55Q53EZ4 464 aa23.59■■□□□ 1.37
LIME1-210ENST00000621325 CPXCR1Q8N123 301 aa23.59■■□□□ 1.37
LIME1-210ENST00000621325 HOOK2Q96ED9 719 aa23.59■■□□□ 1.37
LIME1-210ENST00000621325 COL20A1Q9P218 1284 aa23.59■■□□□ 1.37
LIME1-210ENST00000621325 PITPNM2Q9BZ72 1349 aa23.58■■□□□ 1.37
LIME1-210ENST00000621325 TRAF5O00463 557 aa23.58■■□□□ 1.37
LIME1-210ENST00000621325 IRX3P78415 501 aaPredicted RBP23.58■■□□□ 1.37
LIME1-210ENST00000621325 FKBP15Q5T1M5 1219 aa23.58■■□□□ 1.37
LIME1-210ENST00000621325 SLC5A5Q92911 643 aa23.58■■□□□ 1.37
LIME1-210ENST00000621325 POLR3CQ9BUI4 534 aaPredicted RBP23.58■■□□□ 1.37
LIME1-210ENST00000621325 EMILIN3Q9NT22 766 aa23.58■■□□□ 1.37
LIME1-210ENST00000621325 RSPH10B2B2RC85 870 aa23.58■■□□□ 1.36
LIME1-210ENST00000621325 EPHB6O15197 1021 aa23.58■■□□□ 1.36
LIME1-210ENST00000621325 RSPH10BP0C881 870 aa23.58■■□□□ 1.36
LIME1-210ENST00000621325 MAN2A1Q16706 1144 aa23.58■■□□□ 1.36
LIME1-210ENST00000621325 PRAMEF18Q5VWM3 479 aa23.58■■□□□ 1.36
LIME1-210ENST00000621325 PRPF38AQ8NAV1 312 aaKnown RBP23.58■■□□□ 1.36
LIME1-210ENST00000621325 PIGOQ8TEQ8 1089 aa23.58■■□□□ 1.36
LIME1-210ENST00000621325 HSD17B14Q9BPX1 270 aa23.58■■□□□ 1.36
LIME1-210ENST00000621325 SGIP1Q9BQI5 828 aa23.58■■□□□ 1.36
LIME1-210ENST00000621325 RUSC1Q9BVN2 902 aa23.58■■□□□ 1.36
LIME1-210ENST00000621325 KIAA1683Q9H0B3 1180 aa23.58■■□□□ 1.36
LIME1-210ENST00000621325 FZD1Q9UP38 647 aa23.58■■□□□ 1.36
LIME1-210ENST00000621325 REXO2Q9Y3B8 237 aaKnown RBP23.58■■□□□ 1.36
LIME1-210ENST00000621325 FZD9O00144 591 aa23.57■■□□□ 1.36
LIME1-210ENST00000621325 ZBTB39O15060 712 aa23.57■■□□□ 1.36
LIME1-210ENST00000621325 FGFR1OPO95684 399 aaKnown RBP23.57■■□□□ 1.36
LIME1-210ENST00000621325 KCTD10Q9H3F6 313 aa23.57■■□□□ 1.36
LIME1-210ENST00000621325 EPN1Q9Y6I3 576 aaPredicted RBP23.57■■□□□ 1.36
LIME1-210ENST00000621325 WDR46O15213 610 aaKnown RBP23.57■■□□□ 1.36
LIME1-210ENST00000621325 HOXA7P31268 230 aaPredicted RBP23.57■■□□□ 1.36
LIME1-210ENST00000621325 FKBP3Q00688 224 aaKnown RBP23.57■■□□□ 1.36
LIME1-210ENST00000621325 MTMR2Q13614 643 aa23.57■■□□□ 1.36
LIME1-210ENST00000621325 ELF2Q15723 593 aa23.57■■□□□ 1.36
LIME1-210ENST00000621325 SFR1Q86XK3 245 aa23.57■■□□□ 1.36
LIME1-210ENST00000621325 TPH2Q8IWU9 490 aa23.57■■□□□ 1.36
LIME1-210ENST00000621325 CCDC155Q8N6L0 562 aa23.57■■□□□ 1.36
LIME1-210ENST00000621325 CLEC4DQ8WXI8 215 aa23.57■■□□□ 1.36
LIME1-210ENST00000621325 DYDC2Q96IM9 177 aa23.57■■□□□ 1.36
LIME1-210ENST00000621325 NUP58Q9BVL2 599 aa23.57■■□□□ 1.36
LIME1-210ENST00000621325 TANGO6Q9C0B7 1094 aa23.57■■□□□ 1.36
LIME1-210ENST00000621325 RAVER2Q9HCJ3 691 aaKnown RBP23.57■■□□□ 1.36
LIME1-210ENST00000621325 SIK3Q9Y2K2 1263 aa23.57■■□□□ 1.36
LIME1-210ENST00000621325 ZNF541Q9H0D2 1346 aa23.56■■□□□ 1.36
LIME1-210ENST00000621325 CTNND1O60716 968 aaKnown RBP23.56■■□□□ 1.36
LIME1-210ENST00000621325 SLITRK3O94933 977 aa23.56■■□□□ 1.36
LIME1-210ENST00000621325 HOMER2Q9NSB8 354 aa23.56■■□□□ 1.36
LIME1-210ENST00000621325 NDUFA10O95299 355 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 ARHGAP25P42331 645 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 HSD17B4P51659 736 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 FOXR2Q6PJQ5 311 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 RETREG2Q8NC44 543 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 LPAR1Q92633 364 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 FAM207AQ9NSI2 230 aaPredicted RBP23.55■■□□□ 1.36
LIME1-210ENST00000621325 RABGAP1Q9Y3P9 1069 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 GAS7O60861 476 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 PPP2R5CQ13362 524 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 PDCL2Q8N4E4 241 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 IL31RAQ8NI17 732 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 ZNF577Q9BSK1 485 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 CD2APQ9Y5K6 639 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 COL4A3BPQ9Y5P4 624 aa23.55■■□□□ 1.36
LIME1-210ENST00000621325 EYA4O95677 639 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 ALAS1P13196 640 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 ZBED6P86452 979 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 MEA1Q16626 185 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 NLGN2Q8NFZ4 835 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 EHMT1Q9H9B1 1298 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 STK24Q9Y6E0 443 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 FLOT1O75955 427 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 ITGB5P18084 799 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 VCAM1P19320 739 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 ERCC6LQ2NKX8 1250 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 TSR1Q2NL82 804 aaKnown RBP23.54■■□□□ 1.36
LIME1-210ENST00000621325 ARHGAP29Q52LW3 1261 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 MUM1L1Q5H9M0 696 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 UNC45AQ9H3U1 944 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 WRAP73Q9P2S5 460 aaPredicted RBP23.54■■□□□ 1.36
LIME1-210ENST00000621325 LTBP3Q9NS15 1303 aa23.54■■□□□ 1.36
LIME1-210ENST00000621325 HOXD13P35453 343 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 CARD6Q9BX69 1037 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 PKD2L1Q9P0L9 805 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 TFR2Q9UP52 801 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 SFI1A8K8P3 1242 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 KIF5CO60282 957 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 MYBP10242 640 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 SPP2Q13103 211 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 CCDC40Q4G0X9 1142 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 FIGNQ5HY92 759 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 CCDC125Q86Z20 511 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 SMCR8Q8TEV9 937 aaPredicted RBP23.53■■□□□ 1.36
LIME1-210ENST00000621325 ZKSCAN4Q969J2 545 aaPredicted RBP23.53■■□□□ 1.36
LIME1-210ENST00000621325 MMRN2Q9H8L6 949 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 SLC38A10Q9HBR0 1119 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 TRIM10Q9UDY6 481 aa23.53■■□□□ 1.36
LIME1-210ENST00000621325 MAP3K9P80192 1104 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms