RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 SEPT2Q15019 361 aa21.49■■□□□ 1.03
PDLIM3-212ENST00000620787 UAP1Q16222 522 aaPredicted RBP21.49■■□□□ 1.03
PDLIM3-212ENST00000620787 ASIC2Q16515 512 aa21.49■■□□□ 1.03
PDLIM3-212ENST00000620787 C16orf86Q6ZW13 317 aa21.49■■□□□ 1.03
PDLIM3-212ENST00000620787 PANK4Q9NVE7 773 aa21.49■■□□□ 1.03
PDLIM3-212ENST00000620787 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.49■■□□□ 1.03
PDLIM3-212ENST00000620787 USP17L5A8MUK1 530 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 KCNK3O14649 394 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 ADCY7P51828 1080 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 ENOX2Q16206 610 aaKnown RBP21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 C6orf89Q6UWU4 347 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 SCFD2Q8WU76 684 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 TAF4BQ92750 862 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 ARFGEF1Q9Y6D6 1849 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 E7EVH7 732 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 KIF4AO95239 1232 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 GNA14O95837 355 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 HPDP32754 393 aaPredicted RBP21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 GSCP56915 257 aaPredicted RBP21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 GSTO1P78417 241 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 HLTFQ14527 1009 aaKnown RBP eCLIP21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 RPS6KA1Q15418 735 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 WDR66Q8TBY9 1149 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 COA7Q96BR5 231 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 CEP95Q96GE4 821 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 VCPKMTQ9H867 229 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 ZNF287Q9HBT7 754 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 TBC1D7Q9P0N9 293 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 PCDHA2Q9Y5H9 948 aa21.48■■□□□ 1.03
PDLIM3-212ENST00000620787 COL24A1Q17RW2 1714 aa21.47■■□□□ 1.03
PDLIM3-212ENST00000620787 hCG_1984214I3L0E3 225 aa21.47■■□□□ 1.03
PDLIM3-212ENST00000620787 USP11P51784 963 aa21.47■■□□□ 1.03
PDLIM3-212ENST00000620787 CUL1Q13616 776 aa21.47■■□□□ 1.03
PDLIM3-212ENST00000620787 ZNF713Q8N859 430 aaPredicted RBP21.47■■□□□ 1.03
PDLIM3-212ENST00000620787 NLRP3Q96P20 1036 aa21.47■■□□□ 1.03
PDLIM3-212ENST00000620787 GOLGA6L10A6NI86 522 aa21.47■■□□□ 1.03
PDLIM3-212ENST00000620787 ACTN3Q08043 901 aaPredicted RBP21.47■■□□□ 1.03
PDLIM3-212ENST00000620787 DDR1Q08345 913 aa21.47■■□□□ 1.03
PDLIM3-212ENST00000620787 RNF187Q5TA31 235 aaPredicted RBP21.47■■□□□ 1.03
PDLIM3-212ENST00000620787 NELFCDQ8IXH7 590 aa21.47■■□□□ 1.03
PDLIM3-212ENST00000620787 MARCH10Q8NA82 808 aaPredicted RBP21.47■■□□□ 1.03
PDLIM3-212ENST00000620787 OR2W6PQ8NHA6 318 aa21.47■■□□□ 1.03
PDLIM3-212ENST00000620787 GCOM1H8Y6P7 765 aaPredicted RBP21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 MYZAPP0CAP1 466 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 ZBTB48P10074 688 aaPredicted RBP21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 DDB1Q16531 1140 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 ZC3H3Q8IXZ2 948 aaKnown RBP21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 ARFGAP2Q8N6H7 521 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 CYFIP2Q96F07 1278 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 PBKQ96KB5 322 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 NEUROG2Q9H2A3 272 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 SLC12A6Q9UHW9 1150 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 ZNF844Q08AG5 666 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 IFT88Q13099 833 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 DDX42Q86XP3 938 aaKnown RBP eCLIP21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 LRRC57Q8N9N7 239 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 ACTRT1Q8TDG2 376 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 HAS1Q92839 578 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 RTFDC1Q9BY42 306 aaPredicted RBP21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 KCTD10Q9H3F6 313 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 GOLPH3Q9H4A6 298 aa21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 PPANQ9NQ55 473 aaKnown RBP21.46■■□□□ 1.03
PDLIM3-212ENST00000620787 FRMPD2Q68DX3 1309 aaPredicted RBP21.45■■□□□ 1.02
PDLIM3-212ENST00000620787 NOVP48745 357 aa21.45■■□□□ 1.02
PDLIM3-212ENST00000620787 PTK2Q05397 1052 aa21.45■■□□□ 1.02
PDLIM3-212ENST00000620787 DPY19L2P1Q6NXN4 242 aa21.45■■□□□ 1.02
PDLIM3-212ENST00000620787 LINC00116Q8NCU8 138 aa21.45■■□□□ 1.02
PDLIM3-212ENST00000620787 CENPHQ9H3R5 247 aa21.45■■□□□ 1.02
PDLIM3-212ENST00000620787 PLCB4Q15147 1175 aa21.45■■□□□ 1.02
PDLIM3-212ENST00000620787 ZNF571Q7Z3V5 609 aaPredicted RBP21.45■■□□□ 1.02
PDLIM3-212ENST00000620787 IRF2BP2Q7Z5L9 587 aa21.45■■□□□ 1.02
PDLIM3-212ENST00000620787 SLC51AQ86UW1 340 aa21.45■■□□□ 1.02
PDLIM3-212ENST00000620787 GJA10Q969M2 543 aa21.45■■□□□ 1.02
PDLIM3-212ENST00000620787 LRRC45Q96CN5 670 aa21.45■■□□□ 1.02
PDLIM3-212ENST00000620787 CEP104O60308 925 aa21.44■■□□□ 1.02
PDLIM3-212ENST00000620787 PDHBP11177 359 aa21.44■■□□□ 1.02
PDLIM3-212ENST00000620787 TNNI2P48788 182 aa21.44■■□□□ 1.02
PDLIM3-212ENST00000620787 C10orf76Q5T2E6 689 aa21.44■■□□□ 1.02
PDLIM3-212ENST00000620787 SMIM5Q71RC9 77 aa21.44■■□□□ 1.02
PDLIM3-212ENST00000620787 CCDC13Q8IYE1 715 aa21.44■■□□□ 1.02
PDLIM3-212ENST00000620787 CCDC24Q8N4L8 307 aa21.44■■□□□ 1.02
PDLIM3-212ENST00000620787 SCFD1Q8WVM8 642 aa21.44■■□□□ 1.02
PDLIM3-212ENST00000620787 CALR3Q96L12 384 aaKnown RBP21.44■■□□□ 1.02
PDLIM3-212ENST00000620787 HYIQ5T013 277 aa21.44■■□□□ 1.02
PDLIM3-212ENST00000620787 NYXQ9GZU5 481 aa21.44■■□□□ 1.02
PDLIM3-212ENST00000620787 A1CFQ9NQ94 594 aaKnown RBP21.44■■□□□ 1.02
PDLIM3-212ENST00000620787 SART1O43290 800 aaKnown RBP21.43■■□□□ 1.02
PDLIM3-212ENST00000620787 SSBP05455 408 aaKnown RBP eCLIP21.43■■□□□ 1.02
PDLIM3-212ENST00000620787 ACTN1P12814 892 aa21.43■■□□□ 1.02
PDLIM3-212ENST00000620787 TM4SF1P30408 202 aa21.43■■□□□ 1.02
PDLIM3-212ENST00000620787 CTNNA1P35221 906 aaKnown RBP21.43■■□□□ 1.02
PDLIM3-212ENST00000620787 SMTNP53814 917 aa21.43■■□□□ 1.02
PDLIM3-212ENST00000620787 SETQ01105 290 aaPredicted RBP21.43■■□□□ 1.02
PDLIM3-212ENST00000620787 KCNH2Q12809 1159 aa21.43■■□□□ 1.02
PDLIM3-212ENST00000620787 DRP2Q13474 957 aa21.43■■□□□ 1.02
PDLIM3-212ENST00000620787 PROCA1Q8NCQ7 364 aaPredicted RBP21.43■■□□□ 1.02
PDLIM3-212ENST00000620787 AP1M1Q9BXS5 423 aa21.43■■□□□ 1.02
PDLIM3-212ENST00000620787 NOC2LQ9Y3T9 749 aaKnown RBP21.43■■□□□ 1.02
PDLIM3-212ENST00000620787 ZNF831Q5JPB2 1677 aa21.43■■□□□ 1.02
PDLIM3-212ENST00000620787 ZNF335Q9H4Z2 1342 aaPredicted RBP21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms