RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 DBF4BQ8NFT6 615 aa13.66□□□□□ -0.22
UPF3B-204ENST00000619445 WNT8BQ93098 351 aa13.66□□□□□ -0.22
UPF3B-204ENST00000619445 ZFP91Q96JP5 570 aaPredicted RBP13.66□□□□□ -0.22
UPF3B-204ENST00000619445 NEK1Q96PY6 1258 aa13.66□□□□□ -0.22
UPF3B-204ENST00000619445 SMARCAD1Q9H4L7 1026 aa13.66□□□□□ -0.22
UPF3B-204ENST00000619445 KCNA2P16389 499 aa13.65□□□□□ -0.22
UPF3B-204ENST00000619445 TCF7P36402 384 aaPredicted RBP13.65□□□□□ -0.22
UPF3B-204ENST00000619445 ADAM17P78536 824 aa13.65□□□□□ -0.22
UPF3B-204ENST00000619445 HTRA4P83105 476 aaPredicted RBP13.65□□□□□ -0.22
UPF3B-204ENST00000619445 ARHGAP4P98171 946 aa13.65□□□□□ -0.22
UPF3B-204ENST00000619445 HIC1Q14526 733 aa13.65□□□□□ -0.22
UPF3B-204ENST00000619445 FAM26DQ5JW98 314 aa13.65□□□□□ -0.22
UPF3B-204ENST00000619445 UTP14CQ5TAP6 766 aaKnown RBP13.65□□□□□ -0.22
UPF3B-204ENST00000619445 APOA5Q6Q788 366 aa13.65□□□□□ -0.22
UPF3B-204ENST00000619445 DHX32Q7L7V1 743 aaKnown RBP13.65□□□□□ -0.22
UPF3B-204ENST00000619445 HEATR3Q7Z4Q2 680 aa13.65□□□□□ -0.22
UPF3B-204ENST00000619445 MYOCDQ8IZQ8 938 aa13.65□□□□□ -0.22
UPF3B-204ENST00000619445 HLA-CQ95604 372 aa13.65□□□□□ -0.22
UPF3B-204ENST00000619445 SETD4Q9NVD3 440 aa13.65□□□□□ -0.22
UPF3B-204ENST00000619445 UBIAD1Q9Y5Z9 338 aa13.65□□□□□ -0.22
UPF3B-204ENST00000619445 COL4A6Q14031 1691 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 CCDC196A0A1B0GTZ2 297 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 LINC01553A4QN01 128 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 EPOPA6NHQ4 379 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 RRN3P2A6NIE6 340 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 ZBTB43O43298 467 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 SP4Q02446 784 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 MKRN4PQ13434 485 aaPredicted RBP13.64□□□□□ -0.23
UPF3B-204ENST00000619445 RTN1Q16799 776 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 PTPROQ16827 1216 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 MCTP2Q6DN12 878 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 SP7Q8TDD2 431 aaPredicted RBP13.64□□□□□ -0.23
UPF3B-204ENST00000619445 LMBR1Q8WVP7 490 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 GLG1Q92896 1179 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 IFIH1Q9BYX4 1025 aaKnown RBP13.64□□□□□ -0.23
UPF3B-204ENST00000619445 AZI2Q9H6S1 392 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 JADE2Q9NQC1 790 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 PCDHA6Q9UN73 950 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 PCDHA8Q9Y5H6 950 aa13.64□□□□□ -0.23
UPF3B-204ENST00000619445 COL4A4P53420 1690 aaPredicted RBP13.64□□□□□ -0.23
UPF3B-204ENST00000619445 LCHNA4D1U4 455 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 RFXAPO00287 272 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 LPXNO60711 386 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 CDC45O75419 566 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 BMP1P13497 986 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 ITGB5P18084 799 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 RXRAP19793 462 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 NAPAP54920 295 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 PPFIA1Q13136 1202 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 AP3B2Q13367 1082 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 TRIM50Q86XT4 487 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 CCDC82Q8N4S0 544 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 FBXO22Q8NEZ5 403 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 TOP1MTQ969P6 601 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 YME1L1Q96TA2 773 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 SDF4Q9BRK5 362 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 BCAS3Q9H6U6 928 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 JPH1Q9HDC5 661 aaPredicted RBP13.63□□□□□ -0.23
UPF3B-204ENST00000619445 RIC8AQ9NPQ8 531 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 TUBE1Q9UJT0 475 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 NFASCO94856 1347 aa13.63□□□□□ -0.23
UPF3B-204ENST00000619445 ARHGEF15O94989 841 aa13.62□□□□□ -0.23
UPF3B-204ENST00000619445 CTSHP09668 335 aa13.62□□□□□ -0.23
UPF3B-204ENST00000619445 SLC26A2P50443 739 aa13.62□□□□□ -0.23
UPF3B-204ENST00000619445 ADCY7P51828 1080 aa13.62□□□□□ -0.23
UPF3B-204ENST00000619445 FGD1P98174 961 aa13.62□□□□□ -0.23
UPF3B-204ENST00000619445 CMTR1Q8N1G2 835 aaKnown RBP13.62□□□□□ -0.23
UPF3B-204ENST00000619445 LRRC2Q9BYS8 371 aa13.62□□□□□ -0.23
UPF3B-204ENST00000619445 SUGCTQ9HAC7 445 aa13.62□□□□□ -0.23
UPF3B-204ENST00000619445 SLC9A2Q9UBY0 812 aa13.62□□□□□ -0.23
UPF3B-204ENST00000619445 RWDD3Q9Y3V2 267 aa13.62□□□□□ -0.23
UPF3B-204ENST00000619445 SQORQ9Y6N5 450 aa13.62□□□□□ -0.23
UPF3B-204ENST00000619445 TCF20Q9UGU0 1960 aaKnown RBP13.62□□□□□ -0.23
UPF3B-204ENST00000619445 CNTNAP5Q8WYK1 1306 aa13.62□□□□□ -0.23
UPF3B-204ENST00000619445 GSTTP1A0A1W2PQM5 241 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 MBLAC1A4D2B0 266 aaPredicted RBP13.61□□□□□ -0.23
UPF3B-204ENST00000619445 M0QZ92 97 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 ATP9AO75110 1047 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 EXOSC10Q01780 885 aaKnown RBP13.61□□□□□ -0.23
UPF3B-204ENST00000619445 GRIK4Q16099 956 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 UBE2SQ16763 222 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 TCTN1Q2MV58 587 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 TIGD5Q53EQ6 642 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 CEP55Q53EZ4 464 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 IER5Q5VY09 327 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 FAM117BQ6P1L5 589 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.61□□□□□ -0.23
UPF3B-204ENST00000619445 NIPA1Q7RTP0 329 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 PLPPR4Q7Z2D5 763 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 TMCO2Q7Z6W1 182 aaPredicted RBP13.61□□□□□ -0.23
UPF3B-204ENST00000619445 GDPD5Q8WTR4 605 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 CCDC12Q8WUD4 166 aaPredicted RBP13.61□□□□□ -0.23
UPF3B-204ENST00000619445 MXRA8Q9BRK3 442 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 KCNH7Q9NS40 1196 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 RNF216Q9NWF9 866 aaPredicted RBP13.61□□□□□ -0.23
UPF3B-204ENST00000619445 BARHL2Q9NY43 387 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 MUC3AQ02505 3323 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 RALGAPA2Q2PPJ7 1873 aa13.61□□□□□ -0.23
UPF3B-204ENST00000619445 GOLGA8AA7E2F4 631 aa13.6□□□□□ -0.23
UPF3B-204ENST00000619445 GOLGA8BA8MQT2 603 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms