RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 ECM1Q16610 540 aa13.16□□□□□ -0.3
PDPN-211ENST00000617617 STX1AQ16623 288 aa13.16□□□□□ -0.3
PDPN-211ENST00000617617 CPA4Q9UI42 421 aa13.16□□□□□ -0.3
PDPN-211ENST00000617617 SLITRK3O94933 977 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 CDC25AP30304 524 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 MAP2K5Q13163 448 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 COBLL1Q53SF7 1204 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 NCAPH2Q6IBW4 605 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 SASS6Q6UVJ0 657 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 LARP4BQ92615 738 aaKnown RBP13.15□□□□□ -0.3
PDPN-211ENST00000617617 GJA10Q969M2 543 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 EMID1Q96A84 441 aaPredicted RBP13.15□□□□□ -0.3
PDPN-211ENST00000617617 KCND2Q9NZV8 630 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 WDR64B1ANS9 1081 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 ATP9AO75110 1047 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 PGK2P07205 417 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 NLRP12P59046 1061 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 NEDD9Q14511 834 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 CCDC62Q6P9F0 684 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 PDILTQ8N807 584 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 CDK5RAP3Q96JB5 506 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 MAML3Q96JK9 1138 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 ZIC5Q96T25 663 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 ANO10Q9NW15 660 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 SAGE1Q9NXZ1 904 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 DBR1Q9UK59 544 aaKnown RBP13.15□□□□□ -0.3
PDPN-211ENST00000617617 GJD2Q9UKL4 321 aa13.15□□□□□ -0.3
PDPN-211ENST00000617617 IGKV6D-21A0A0A0MT36 114 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 EYA4O95677 639 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 P4HBP07237 508 aaKnown RBP13.14□□□□□ -0.31
PDPN-211ENST00000617617 PNOCQ13519 176 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 MORC3Q14149 939 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 RMND1Q9NWS8 449 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 NRBP1Q9UHY1 535 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 SIP14410 1827 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 PVALEFA0A1B0GWK0 134 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 DKC1O60832 514 aaKnown RBP eCLIP13.14□□□□□ -0.31
PDPN-211ENST00000617617 SLC12A3P55017 1021 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 SV2BQ7L1I2 683 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 ARMCX2Q7L311 632 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 C4orf19Q8IY42 314 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 SYT2Q8N9I0 419 aaPredicted RBP13.14□□□□□ -0.31
PDPN-211ENST00000617617 SMARCE1Q969G3 411 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 JPH1Q9HDC5 661 aaPredicted RBP13.14□□□□□ -0.31
PDPN-211ENST00000617617 DDX41Q9UJV9 622 aaKnown RBP13.14□□□□□ -0.31
PDPN-211ENST00000617617 PCDHA5Q9Y5H7 936 aa13.14□□□□□ -0.31
PDPN-211ENST00000617617 CCNE2O96020 404 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 PRR29P0C7W0 189 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 XRCC5P13010 732 aaKnown RBP13.13□□□□□ -0.31
PDPN-211ENST00000617617 MIER3Q7Z3K6 550 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 GAS2L3Q86XJ1 694 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 CKAP2LQ8IYA6 745 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 TRIM9Q9C026 710 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 SLC9A2Q9UBY0 812 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 TCEAL9Q9UHQ7 104 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 FOXN1O15353 648 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 KLRC4O43908 158 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 TAPT1Q6NXT6 567 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 ABHD15Q6UXT9 468 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 NACC1Q96RE7 527 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 MAN1B1Q9UKM7 699 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 KIAA1024Q9UPX6 916 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 IGSF9BQ9UPX0 1349 aa13.13□□□□□ -0.31
PDPN-211ENST00000617617 POTEB3A0JP26 581 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 FRMD3A2A2Y4 597 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 FARP2O94887 1054 aaPredicted RBP13.12□□□□□ -0.31
PDPN-211ENST00000617617 UBA1P22314 1058 aaKnown RBP13.12□□□□□ -0.31
PDPN-211ENST00000617617 RGS2P41220 211 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 SP2Q02086 613 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 EHHADHQ08426 723 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 UVSSAQ2YD98 709 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 POTEBQ6S5H4 581 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 METTL7BQ6UX53 244 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 KCNK18Q7Z418 384 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 AFAP1L1Q8TED9 768 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 SCFD2Q8WU76 684 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 APBA2Q99767 749 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 PANK2Q9BZ23 570 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 ZSWIM4Q9H7M6 989 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 DNM3Q9UQ16 869 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 PPME1Q9Y570 386 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 PCDHA10Q9Y5I2 948 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 NKRFO15226 690 aaKnown RBP eCLIP13.12□□□□□ -0.31
PDPN-211ENST00000617617 RHOBTB3O94955 611 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 QARSP47897 775 aaKnown RBP13.12□□□□□ -0.31
PDPN-211ENST00000617617 TPRNQ4KMQ1 711 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 TRMT44Q8IYL2 757 aaKnown RBP13.12□□□□□ -0.31
PDPN-211ENST00000617617 DYDC2Q96IM9 177 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 TINF2Q9BSI4 451 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 ANKEF1Q9NU02 776 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 FRMPD3Q5JV73 1810 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 AOC2O75106 756 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 SNAI1O95863 264 aaPredicted RBP13.12□□□□□ -0.31
PDPN-211ENST00000617617 GNRH1P01148 92 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 PSAPP07602 524 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 PLA2G4BP0C869 781 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 FCGRTP55899 365 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 PSMC5P62195 406 aa13.12□□□□□ -0.31
PDPN-211ENST00000617617 CELF3Q5SZQ8 465 aaKnown RBP13.12□□□□□ -0.31
PDPN-211ENST00000617617 MLKLQ8NB16 471 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms