RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 SFPQP23246 707 aaKnown RBP eCLIP8.68□□□□□ -1.02
NEK3-207ENST00000617054 RPA1P27694 616 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 CASP5P51878 434 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 SLC12A3P55017 1021 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 COASYQ13057 564 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 ITGB3BPQ13352 177 aaPredicted RBP8.68□□□□□ -1.02
NEK3-207ENST00000617054 ARHGEF16Q5VV41 709 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 TTI2Q6NXR4 508 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 UNC13DQ70J99 1090 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 CDCA5Q96FF9 252 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 FAM20AQ96MK3 541 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 NAP1L4Q99733 375 aaKnown RBP8.68□□□□□ -1.02
NEK3-207ENST00000617054 MXRA8Q9BRK3 442 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 RUSC1Q9BVN2 902 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 TSPYL2Q9H2G4 693 aaPredicted RBP8.68□□□□□ -1.02
NEK3-207ENST00000617054 ADD3Q9UEY8 706 aaKnown RBP8.68□□□□□ -1.02
NEK3-207ENST00000617054 DNM3Q9UQ16 869 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 CSADQ9Y600 493 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 CBFA2T2O43439 604 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 PGM5Q15124 567 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 MOXD1Q6UVY6 613 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 KSR1Q8IVT5 923 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 NT5C3AQ9H0P0 336 aa8.68□□□□□ -1.02
NEK3-207ENST00000617054 A0A1B0GTH6 734 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 KLK7P49862 253 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 CNTN2Q02246 1040 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 RBL2Q08999 1139 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 KCNA1Q09470 495 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 TKFCQ3LXA3 575 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 CNNM4Q6P4Q7 775 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 REPS2Q8NFH8 660 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 P2RX5Q93086 422 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 HSD17B14Q9BPX1 270 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 REEP2Q9BRK0 252 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 COL11A1P12107 1806 aaPredicted RBP8.67□□□□□ -1.02
NEK3-207ENST00000617054 DOCK1Q14185 1865 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 TBX3O15119 743 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 RFX1P22670 979 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 UBXN1Q04323 297 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 STIM1Q13586 685 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 MTMR1Q13613 665 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 HAUS3Q68CZ6 603 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 SPECC1LQ69YQ0 1117 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 MCF2L2Q86YR7 1114 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 SLC5A5Q92911 643 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 BTBD7Q9P203 1132 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 B4DLN1 442 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 C19orf81C9J6K1 198 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 MYL1P05976 194 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 COPB1P53618 953 aaKnown RBP8.67□□□□□ -1.02
NEK3-207ENST00000617054 TRAF1Q13077 416 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 GIT2Q14161 759 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 HYIQ5T013 277 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 CCDC155Q8N6L0 562 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 ERMNQ8TAM6 284 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 ZNF526Q8TF50 670 aaPredicted RBP8.67□□□□□ -1.02
NEK3-207ENST00000617054 CCDC47Q96A33 483 aaKnown RBP8.67□□□□□ -1.02
NEK3-207ENST00000617054 PDCD2LQ9BRP1 358 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 MAGEF1Q9HAY2 307 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 A1CFQ9NQ94 594 aaKnown RBP8.67□□□□□ -1.02
NEK3-207ENST00000617054 PXMP2Q9NR77 195 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 KDM3AQ9Y4C1 1321 aa8.67□□□□□ -1.02
NEK3-207ENST00000617054 GLTPD2A6NH11 291 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 DHX15O43143 795 aaKnown RBP8.66□□□□□ -1.02
NEK3-207ENST00000617054 TPM3P06753 285 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 CASP14P31944 242 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 UTP14CQ5TAP6 766 aaKnown RBP8.66□□□□□ -1.02
NEK3-207ENST00000617054 TMCO4Q5TGY1 634 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 EEPD1Q7L9B9 569 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 LXNQ9BS40 222 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 IMPACTQ9P2X3 320 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 RABGAP1Q9Y3P9 1069 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 PPP2R3BQ9Y5P8 575 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 RBAK-RBAKDNI3L0D1 243 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 PRPF6O94906 941 aaKnown RBP8.66□□□□□ -1.02
NEK3-207ENST00000617054 CCNE1P24864 410 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 FXR1P51114 621 aaKnown RBP eCLIP8.66□□□□□ -1.02
NEK3-207ENST00000617054 MTF1Q14872 753 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 FAM26FQ5R3K3 315 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 MCTP2Q6DN12 878 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 EFCAB3Q8N7B9 438 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 TC2NQ8N9U0 490 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 ZNF592Q92610 1267 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 OPTNQ96CV9 577 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 TMX1Q9H3N1 280 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 TAF1DQ9H5J8 278 aaPredicted RBP8.66□□□□□ -1.02
NEK3-207ENST00000617054 HOXC10Q9NYD6 342 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 PHIPQ8WWQ0 1821 aa8.66□□□□□ -1.02
NEK3-207ENST00000617054 PVALEFA0A1B0GWK0 134 aa8.65□□□□□ -1.02
NEK3-207ENST00000617054 OFD1O75665 1012 aa8.65□□□□□ -1.02
NEK3-207ENST00000617054 NR3C2P08235 984 aa8.65□□□□□ -1.02
NEK3-207ENST00000617054 MYBP10242 640 aa8.65□□□□□ -1.02
NEK3-207ENST00000617054 IREB2P48200 963 aaKnown RBP8.65□□□□□ -1.02
NEK3-207ENST00000617054 ZC2HC1CQ53FD0 456 aaPredicted RBP8.65□□□□□ -1.02
NEK3-207ENST00000617054 NCAPG2Q86XI2 1143 aa8.65□□□□□ -1.02
NEK3-207ENST00000617054 SFR1Q86XK3 245 aa8.65□□□□□ -1.02
NEK3-207ENST00000617054 SYT2Q8N9I0 419 aaPredicted RBP8.65□□□□□ -1.02
NEK3-207ENST00000617054 DHTKD1Q96HY7 919 aaPredicted RBP8.65□□□□□ -1.02
NEK3-207ENST00000617054 CNOT6LQ96LI5 555 aaKnown RBP8.65□□□□□ -1.02
NEK3-207ENST00000617054 TEKT3Q9BXF9 490 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms