RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 FAM47CQ5HY64 1035 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 GDF6Q6KF10 455 aaPredicted RBP15.31■□□□□ 0.04
LINC00540-202ENST00000616974 KCNV1Q6PIU1 500 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 NEK8Q86SG6 692 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 FERMT3Q86UX7 667 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 CCDC60Q8IWA6 550 aaPredicted RBP15.31■□□□□ 0.04
LINC00540-202ENST00000616974 MBOAT7Q96N66 472 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 MTG1Q9BT17 334 aaPredicted RBP15.31■□□□□ 0.04
LINC00540-202ENST00000616974 HTATIP2Q9BUP3 242 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 TMEM60Q9H2L4 133 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 HDAC6Q9UBN7 1215 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 SLC9A2Q9UBY0 812 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 ELP1O95163 1332 aa15.31■□□□□ 0.04
LINC00540-202ENST00000616974 SIP14410 1827 aa15.3■□□□□ 0.04
LINC00540-202ENST00000616974 A0A0U1RQG5 324 aaPredicted RBP15.3■□□□□ 0.04
LINC00540-202ENST00000616974 TRANK1O15050 2925 aa15.3■□□□□ 0.04
LINC00540-202ENST00000616974 USP11P51784 963 aa15.3■□□□□ 0.04
LINC00540-202ENST00000616974 DDX25Q9UHL0 483 aaKnown RBP15.3■□□□□ 0.04
LINC00540-202ENST00000616974 A0A0C4DFX4 3053 aa15.3■□□□□ 0.04
LINC00540-202ENST00000616974 CYP3A7-CYP3A51PA0A087WV96 503 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 HAS3O00219 553 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 CYP3A7P24462 503 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 PSEN2P49810 448 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 MDM2Q00987 491 aaPredicted RBP15.29■□□□□ 0.04
LINC00540-202ENST00000616974 MFSD10Q14728 455 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 UGCGQ16739 394 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 SNX21Q969T3 373 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 UNC45AQ9H3U1 944 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 H3BRB1 525 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 EML1O00423 815 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 PPFIA4O75335 1185 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 CD4P01730 458 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 ATP4AP20648 1035 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 PKP1Q13835 747 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 Q4G0T1 1027 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 MCTP1Q6DN14 999 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 FAM173BQ6P4H8 233 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 TRAPPC12Q8WVT3 735 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 PPP1R12CQ9BZL4 782 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 TUT1Q9H6E5 874 aaKnown RBP15.29■□□□□ 0.04
LINC00540-202ENST00000616974 POLR3EQ9NVU0 708 aa15.29■□□□□ 0.04
LINC00540-202ENST00000616974 MYH15Q9Y2K3 1946 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 TMEM150BA6NC51 233 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 PSMD10O75832 226 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 ZNF174Q15697 407 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 C1orf53Q5VUE5 145 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 LARP1BQ659C4 914 aaKnown RBP15.28■□□□□ 0.04
LINC00540-202ENST00000616974 NIPA1Q7RTP0 329 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 ANKRD33Q7Z3H0 272 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 NOSTRINQ8IVI9 506 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 SLC5A5Q92911 643 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 CDHR1Q96JP9 859 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 SH2D3AQ9BRG2 576 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 KCNMB3Q9NPA1 279 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 XIRP2A4UGR9 3374 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 NFASCO94856 1347 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 TCHHQ07283 1943 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 ZEB2O60315 1214 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 U2AF2P26368 475 aaKnown RBP eCLIP15.28■□□□□ 0.04
LINC00540-202ENST00000616974 MCM7P33993 719 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 ABHD15Q6UXT9 468 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 TEX2Q8IWB9 1127 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 OSBPL7Q9BZF2 842 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 FTOQ9C0B1 505 aaKnown RBP eCLIP15.28■□□□□ 0.04
LINC00540-202ENST00000616974 PCDHB6Q9Y5E3 794 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 VCANP13611 3396 aa15.28■□□□□ 0.04
LINC00540-202ENST00000616974 MAFGO15525 162 aa15.27■□□□□ 0.04
LINC00540-202ENST00000616974 SYT1P21579 422 aa15.27■□□□□ 0.04
LINC00540-202ENST00000616974 SETQ01105 290 aaPredicted RBP15.27■□□□□ 0.04
LINC00540-202ENST00000616974 LRCH2Q5VUJ6 765 aa15.27■□□□□ 0.04
LINC00540-202ENST00000616974 FAM177A1Q8N128 213 aaPredicted RBP15.27■□□□□ 0.04
LINC00540-202ENST00000616974 SEPT1Q8WYJ6 367 aa15.27■□□□□ 0.04
LINC00540-202ENST00000616974 DHX38Q92620 1227 aaKnown RBP15.27■□□□□ 0.04
LINC00540-202ENST00000616974 SDF4Q9BRK5 362 aa15.27■□□□□ 0.04
LINC00540-202ENST00000616974 BRMS1Q9HCU9 246 aa15.27■□□□□ 0.04
LINC00540-202ENST00000616974 SETD4Q9NVD3 440 aa15.27■□□□□ 0.04
LINC00540-202ENST00000616974 VAV3Q9UKW4 847 aa15.27■□□□□ 0.04
LINC00540-202ENST00000616974 TBX21Q9UL17 535 aa15.27■□□□□ 0.04
LINC00540-202ENST00000616974 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.27■□□□□ 0.04
LINC00540-202ENST00000616974 CLTBP09497 229 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 CYP2C18P33260 490 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 EPHB4P54760 987 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 BRDTQ58F21 947 aaPredicted RBP15.26■□□□□ 0.03
LINC00540-202ENST00000616974 FOXD4L5Q5VV16 416 aaPredicted RBP15.26■□□□□ 0.03
LINC00540-202ENST00000616974 PPP4R3AQ6IN85 833 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 B3GNT9Q6UX72 402 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 FOXD4L4Q8WXT5 416 aaPredicted RBP15.26■□□□□ 0.03
LINC00540-202ENST00000616974 VWCEQ96DN2 955 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 FOXP1Q9H334 677 aaPredicted RBP15.26■□□□□ 0.03
LINC00540-202ENST00000616974 WRAP73Q9P2S5 460 aaPredicted RBP15.26■□□□□ 0.03
LINC00540-202ENST00000616974 TANC1Q9C0D5 1861 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 UNC80Q8N2C7 3258 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 VPS37CA5D8V6 355 aaPredicted RBP15.26■□□□□ 0.03
LINC00540-202ENST00000616974 TREHO43280 583 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 ZNF862O60290 1169 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 GAS7O60861 476 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 CABYRO75952 493 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 ATG7O95352 703 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 SMIM10L2AP0DMW4 78 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 SMIM10L2BP0DMW5 78 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms