RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 C17orf102A2RUQ5 167 aa21.95■■□□□ 1.1
UPF1-212ENST00000601689 MTIF3Q9H2K0 278 aaKnown RBP21.95■■□□□ 1.1
UPF1-212ENST00000601689 BCAS3Q9H6U6 928 aa21.95■■□□□ 1.1
UPF1-212ENST00000601689 PITPNM1O00562 1244 aa21.94■■□□□ 1.1
UPF1-212ENST00000601689 PARNO95453 639 aaKnown RBP21.94■■□□□ 1.1
UPF1-212ENST00000601689 CYP2C9P11712 490 aa21.94■■□□□ 1.1
UPF1-212ENST00000601689 CYP2C18P33260 490 aa21.94■■□□□ 1.1
UPF1-212ENST00000601689 KRT76Q01546 638 aa21.94■■□□□ 1.1
UPF1-212ENST00000601689 FAM160B1Q5W0V3 765 aa21.94■■□□□ 1.1
UPF1-212ENST00000601689 GDF6Q6KF10 455 aaPredicted RBP21.94■■□□□ 1.1
UPF1-212ENST00000601689 MIS18BP1Q6P0N0 1132 aa21.94■■□□□ 1.1
UPF1-212ENST00000601689 MOXD1Q6UVY6 613 aa21.94■■□□□ 1.1
UPF1-212ENST00000601689 NOC4LQ9BVI4 516 aaKnown RBP21.94■■□□□ 1.1
UPF1-212ENST00000601689 BACH2Q9BYV9 841 aa21.94■■□□□ 1.1
UPF1-212ENST00000601689 IGLV3-22A0A075B6J6 115 aa21.93■■□□□ 1.1
UPF1-212ENST00000601689 M0R2N6 131 aa21.93■■□□□ 1.1
UPF1-212ENST00000601689 DDX39AO00148 427 aaKnown RBP21.93■■□□□ 1.1
UPF1-212ENST00000601689 BACH1O14867 736 aa21.93■■□□□ 1.1
UPF1-212ENST00000601689 MARCH6O60337 910 aa21.93■■□□□ 1.1
UPF1-212ENST00000601689 JAK2O60674 1132 aa21.93■■□□□ 1.1
UPF1-212ENST00000601689 FDPSP14324 419 aaKnown RBP21.93■■□□□ 1.1
UPF1-212ENST00000601689 GCFC2P16383 781 aaKnown RBP21.93■■□□□ 1.1
UPF1-212ENST00000601689 ITGB8P26012 769 aa21.93■■□□□ 1.1
UPF1-212ENST00000601689 SLC26A2P50443 739 aa21.93■■□□□ 1.1
UPF1-212ENST00000601689 ACTR2P61160 394 aa21.93■■□□□ 1.1
UPF1-212ENST00000601689 PTK7Q13308 1070 aa21.93■■□□□ 1.1
UPF1-212ENST00000601689 PSRC1Q6PGN9 363 aaPredicted RBP21.93■■□□□ 1.1
UPF1-212ENST00000601689 NEK8Q86SG6 692 aa21.93■■□□□ 1.1
UPF1-212ENST00000601689 SMAP1Q8IYB5 467 aaPredicted RBP21.93■■□□□ 1.1
UPF1-212ENST00000601689 ATP6V0A1Q93050 837 aa21.93■■□□□ 1.1
UPF1-212ENST00000601689 C8orf76Q96K31 380 aa21.93■■□□□ 1.1
UPF1-212ENST00000601689 SAMM50Q9Y512 469 aa21.93■■□□□ 1.1
UPF1-212ENST00000601689 TRIP12Q14669 1992 aaPredicted RBP21.92■■□□□ 1.1
UPF1-212ENST00000601689 EMSYQ7Z589 1322 aa21.92■■□□□ 1.1
UPF1-212ENST00000601689 NRCAMQ92823 1304 aa21.92■■□□□ 1.1
UPF1-212ENST00000601689 GSTTP1A0A1W2PQM5 241 aa21.92■■□□□ 1.1
UPF1-212ENST00000601689 PFKMP08237 780 aa21.92■■□□□ 1.1
UPF1-212ENST00000601689 SMIM10L2AP0DMW4 78 aa21.92■■□□□ 1.1
UPF1-212ENST00000601689 SMIM10L2BP0DMW5 78 aa21.92■■□□□ 1.1
UPF1-212ENST00000601689 RFC2P35250 354 aa21.92■■□□□ 1.1
UPF1-212ENST00000601689 STAT5BP51692 787 aa21.92■■□□□ 1.1
UPF1-212ENST00000601689 CCL23P55773 120 aa21.92■■□□□ 1.1
UPF1-212ENST00000601689 GNL2Q13823 731 aaKnown RBP21.92■■□□□ 1.1
UPF1-212ENST00000601689 INF2Q27J81 1249 aa21.92■■□□□ 1.1
UPF1-212ENST00000601689 LETM2Q2VYF4 491 aa21.92■■□□□ 1.1
UPF1-212ENST00000601689 ZNF746Q6NUN9 644 aaPredicted RBP21.92■■□□□ 1.1
UPF1-212ENST00000601689 PIK3AP1Q6ZUJ8 805 aa21.92■■□□□ 1.1
UPF1-212ENST00000601689 MYH9P35579 1960 aaKnown RBP21.92■■□□□ 1.1
UPF1-212ENST00000601689 ADAMTS3O15072 1205 aa21.91■■□□□ 1.1
UPF1-212ENST00000601689 GAS7O60861 476 aa21.91■■□□□ 1.1
UPF1-212ENST00000601689 MMP1P03956 469 aa21.91■■□□□ 1.1
UPF1-212ENST00000601689 CSF2RAP15509 400 aa21.91■■□□□ 1.1
UPF1-212ENST00000601689 ITGB3BPQ13352 177 aaPredicted RBP21.91■■□□□ 1.1
UPF1-212ENST00000601689 Q4G0T1 1027 aa21.91■■□□□ 1.1
UPF1-212ENST00000601689 PLPPR4Q7Z2D5 763 aa21.91■■□□□ 1.1
UPF1-212ENST00000601689 AFAP1L1Q8TED9 768 aa21.91■■□□□ 1.1
UPF1-212ENST00000601689 PPP1R13LQ8WUF5 828 aa21.91■■□□□ 1.1
UPF1-212ENST00000601689 RIT2Q99578 217 aa21.91■■□□□ 1.1
UPF1-212ENST00000601689 TEKT3Q9BXF9 490 aa21.91■■□□□ 1.1
UPF1-212ENST00000601689 IL23AQ9NPF7 189 aa21.91■■□□□ 1.1
UPF1-212ENST00000601689 DDX25Q9UHL0 483 aaKnown RBP21.91■■□□□ 1.1
UPF1-212ENST00000601689 CYP3A7-CYP3A51PA0A087WV96 503 aa21.9■■□□□ 1.1
UPF1-212ENST00000601689 RPLP2P05387 115 aaKnown RBP21.9■■□□□ 1.1
UPF1-212ENST00000601689 PSAPP07602 524 aa21.9■■□□□ 1.1
UPF1-212ENST00000601689 ACTN1P12814 892 aa21.9■■□□□ 1.1
UPF1-212ENST00000601689 CYP3A7P24462 503 aa21.9■■□□□ 1.1
UPF1-212ENST00000601689 MARK3P27448 753 aa21.9■■□□□ 1.1
UPF1-212ENST00000601689 LRIT3Q3SXY7 679 aa21.9■■□□□ 1.1
UPF1-212ENST00000601689 LRCH2Q5VUJ6 765 aa21.9■■□□□ 1.1
UPF1-212ENST00000601689 KRT40Q6A162 431 aa21.9■■□□□ 1.1
UPF1-212ENST00000601689 TRIM50Q86XT4 487 aa21.9■■□□□ 1.1
UPF1-212ENST00000601689 RNPC3Q96LT9 517 aaKnown RBP21.9■■□□□ 1.1
UPF1-212ENST00000601689 RNPEPQ9H4A4 650 aa21.9■■□□□ 1.1
UPF1-212ENST00000601689 TRPC6Q9Y210 931 aa21.9■■□□□ 1.1
UPF1-212ENST00000601689 TRIOBPQ9H2D6 2365 aa21.89■■□□□ 1.1
UPF1-212ENST00000601689 RRN3P2A6NIE6 340 aa21.89■■□□□ 1.09
UPF1-212ENST00000601689 CCNT1O60563 726 aaKnown RBP21.89■■□□□ 1.09
UPF1-212ENST00000601689 LGR5O75473 907 aa21.89■■□□□ 1.09
UPF1-212ENST00000601689 ATG7O95352 703 aa21.89■■□□□ 1.09
UPF1-212ENST00000601689 BAG4O95429 457 aaKnown RBP21.89■■□□□ 1.09
UPF1-212ENST00000601689 FGBP02675 491 aa21.89■■□□□ 1.09
UPF1-212ENST00000601689 SFNP31947 248 aa21.89■■□□□ 1.09
UPF1-212ENST00000601689 FOSBP53539 338 aa21.89■■□□□ 1.09
UPF1-212ENST00000601689 PPFIA1Q13136 1202 aa21.89■■□□□ 1.09
UPF1-212ENST00000601689 NPY5RQ15761 445 aa21.89■■□□□ 1.09
UPF1-212ENST00000601689 RSPH3Q86UC2 560 aa21.89■■□□□ 1.09
UPF1-212ENST00000601689 CKAP2LQ8IYA6 745 aa21.89■■□□□ 1.09
UPF1-212ENST00000601689 DIS3L2Q8IYB7 885 aaKnown RBP21.89■■□□□ 1.09
UPF1-212ENST00000601689 ZNF302Q9NR11 478 aa21.89■■□□□ 1.09
UPF1-212ENST00000601689 GJB4Q9NTQ9 266 aa21.89■■□□□ 1.09
UPF1-212ENST00000601689 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.89■■□□□ 1.09
UPF1-212ENST00000601689 PCDHA10Q9Y5I2 948 aa21.89■■□□□ 1.09
UPF1-212ENST00000601689 WDR64B1ANS9 1081 aa21.88■■□□□ 1.09
UPF1-212ENST00000601689 MSH4O15457 936 aa21.88■■□□□ 1.09
UPF1-212ENST00000601689 SELPP16109 830 aa21.88■■□□□ 1.09
UPF1-212ENST00000601689 SHHQ15465 462 aa21.88■■□□□ 1.09
UPF1-212ENST00000601689 PPP4R3AQ6IN85 833 aa21.88■■□□□ 1.09
UPF1-212ENST00000601689 PDXDC2PQ6P474 469 aa21.88■■□□□ 1.09
UPF1-212ENST00000601689 SETD4Q9NVD3 440 aa21.88■■□□□ 1.09
UPF1-212ENST00000601689 DTNBO60941 627 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms