RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PRPF4BQ13523 1007 aaKnown RBP20.12■□□□□ 0.81
UPF1-210ENST00000600689 RPS6KA1Q15418 735 aa20.12■□□□□ 0.81
UPF1-210ENST00000600689 KRT71Q3SY84 523 aa20.12■□□□□ 0.81
UPF1-210ENST00000600689 SNX29Q8TEQ0 813 aa20.12■□□□□ 0.81
UPF1-210ENST00000600689 MAGOHBQ96A72 148 aaKnown RBP20.12■□□□□ 0.81
UPF1-210ENST00000600689 OSBPL7Q9BZF2 842 aa20.12■□□□□ 0.81
UPF1-210ENST00000600689 GRID2IPA4D2P6 1211 aa20.12■□□□□ 0.81
UPF1-210ENST00000600689 GMNCA6NCL1 334 aa20.12■□□□□ 0.81
UPF1-210ENST00000600689 PPP1R12BO60237 982 aaPredicted RBP20.12■□□□□ 0.81
UPF1-210ENST00000600689 FGRP09769 529 aa20.12■□□□□ 0.81
UPF1-210ENST00000600689 CDC37Q16543 378 aaPredicted RBP20.12■□□□□ 0.81
UPF1-210ENST00000600689 SOGA3Q5TF21 947 aa20.12■□□□□ 0.81
UPF1-210ENST00000600689 ZNF572Q7Z3I7 529 aaPredicted RBP20.12■□□□□ 0.81
UPF1-210ENST00000600689 LARP4BQ92615 738 aaKnown RBP20.12■□□□□ 0.81
UPF1-210ENST00000600689 BLOC1S4Q9NUP1 217 aa20.12■□□□□ 0.81
UPF1-210ENST00000600689 NPHP3-ACAD11A0A0J9YXS1 232 aa20.11■□□□□ 0.81
UPF1-210ENST00000600689 HNRNPH3P31942 346 aaKnown RBP20.11■□□□□ 0.81
UPF1-210ENST00000600689 UAP1Q16222 522 aaPredicted RBP20.11■□□□□ 0.81
UPF1-210ENST00000600689 CNBD1Q8NA66 436 aa20.11■□□□□ 0.81
UPF1-210ENST00000600689 GJD4Q96KN9 370 aaPredicted RBP20.11■□□□□ 0.81
UPF1-210ENST00000600689 BARHL2Q9NY43 387 aa20.11■□□□□ 0.81
UPF1-210ENST00000600689 HGSO14964 777 aaPredicted RBP20.11■□□□□ 0.81
UPF1-210ENST00000600689 IFFO1Q0D2I5 559 aa20.11■□□□□ 0.81
UPF1-210ENST00000600689 NEK8Q86SG6 692 aa20.11■□□□□ 0.81
UPF1-210ENST00000600689 ZNF444Q8N0Y2 327 aaPredicted RBP20.11■□□□□ 0.81
UPF1-210ENST00000600689 TAF1DQ9H5J8 278 aaPredicted RBP20.11■□□□□ 0.81
UPF1-210ENST00000600689 TMBIM4Q9HC24 238 aa20.11■□□□□ 0.81
UPF1-210ENST00000600689 GGT7Q9UJ14 662 aa20.11■□□□□ 0.81
UPF1-210ENST00000600689 TAF1LQ8IZX4 1826 aa20.11■□□□□ 0.81
UPF1-210ENST00000600689 NHSQ6T4R5 1651 aa20.11■□□□□ 0.81
UPF1-210ENST00000600689 HMGB1P1B2RPK0 211 aaPredicted RBP20.11■□□□□ 0.81
UPF1-210ENST00000600689 PDE6BP35913 854 aa20.11■□□□□ 0.81
UPF1-210ENST00000600689 ASTE1Q2TB18 679 aaPredicted RBP20.11■□□□□ 0.81
UPF1-210ENST00000600689 GLE1Q53GS7 698 aaKnown RBP20.11■□□□□ 0.81
UPF1-210ENST00000600689 USP38Q8NB14 1042 aa20.11■□□□□ 0.81
UPF1-210ENST00000600689 COA7Q96BR5 231 aa20.11■□□□□ 0.81
UPF1-210ENST00000600689 TSG101Q99816 390 aa20.11■□□□□ 0.81
UPF1-210ENST00000600689 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.1■□□□□ 0.81
UPF1-210ENST00000600689 ORC4O43929 436 aa20.1■□□□□ 0.81
UPF1-210ENST00000600689 EIF6P56537 245 aaKnown RBP20.1■□□□□ 0.81
UPF1-210ENST00000600689 ZNF844Q08AG5 666 aa20.1■□□□□ 0.81
UPF1-210ENST00000600689 BANK1Q8NDB2 785 aa20.1■□□□□ 0.81
UPF1-210ENST00000600689 INPP4AQ96PE3 977 aaPredicted RBP20.1■□□□□ 0.81
UPF1-210ENST00000600689 PIGSQ96S52 555 aa20.1■□□□□ 0.81
UPF1-210ENST00000600689 BAIAP2L1Q9UHR4 511 aa20.1■□□□□ 0.81
UPF1-210ENST00000600689 M0R2N6 131 aa20.1■□□□□ 0.81
UPF1-210ENST00000600689 RGL2O15211 777 aa20.1■□□□□ 0.81
UPF1-210ENST00000600689 SLC37A4O43826 429 aa20.1■□□□□ 0.81
UPF1-210ENST00000600689 MYL1P05976 194 aa20.1■□□□□ 0.81
UPF1-210ENST00000600689 MEX3CQ5U5Q3 659 aaKnown RBP20.1■□□□□ 0.81
UPF1-210ENST00000600689 MAPKAPK5Q8IW41 473 aa20.1■□□□□ 0.81
UPF1-210ENST00000600689 SH3RF3Q8TEJ3 882 aaPredicted RBP20.1■□□□□ 0.81
UPF1-210ENST00000600689 LEMD3Q9Y2U8 911 aa20.1■□□□□ 0.81
UPF1-210ENST00000600689 FRMPD2Q68DX3 1309 aaPredicted RBP20.1■□□□□ 0.81
UPF1-210ENST00000600689 SART1O43290 800 aaKnown RBP20.09■□□□□ 0.81
UPF1-210ENST00000600689 GRAPQ13588 217 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 NAB2Q15742 525 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 CALCRLQ16602 461 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 CYB5D1Q6P9G0 228 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 LRRC55Q6ZSA7 311 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 GRAPLQ8TC17 118 aaPredicted RBP20.09■□□□□ 0.81
UPF1-210ENST00000600689 WHAMMQ8TF30 809 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 TGFBRAP1Q8WUH2 860 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 SEC16BQ96JE7 1060 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 SELENOSQ9BQE4 189 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 TMEM47Q9BQJ4 181 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 ATP8A1Q9Y2Q0 1164 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 THSD7AQ9UPZ6 1657 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 KRIT1O00522 736 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 NOL4O94818 638 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 TNNI2P48788 182 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 SNCBQ16143 134 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 MEI1Q5TIA1 1274 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 RAPGEF5Q92565 580 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 PNMA5Q96PV4 448 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 ATP8A2Q9NTI2 1148 aa20.09■□□□□ 0.81
UPF1-210ENST00000600689 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.09■□□□□ 0.81
UPF1-210ENST00000600689 TTI1O43156 1089 aa20.08■□□□□ 0.81
UPF1-210ENST00000600689 PJA2O43164 708 aa20.08■□□□□ 0.81
UPF1-210ENST00000600689 SERPING1P05155 500 aa20.08■□□□□ 0.81
UPF1-210ENST00000600689 SMTNP53814 917 aa20.08■□□□□ 0.81
UPF1-210ENST00000600689 PRR5LQ6MZQ0 368 aa20.08■□□□□ 0.81
UPF1-210ENST00000600689 PARP9Q8IXQ6 854 aa20.08■□□□□ 0.81
UPF1-210ENST00000600689 LDHBP07195 334 aaKnown RBP20.08■□□□□ 0.81
UPF1-210ENST00000600689 DHX9Q08211 1270 aaKnown RBP20.08■□□□□ 0.81
UPF1-210ENST00000600689 NEDD9Q14511 834 aa20.08■□□□□ 0.81
UPF1-210ENST00000600689 ASIC2Q16515 512 aa20.08■□□□□ 0.81
UPF1-210ENST00000600689 UNC13DQ70J99 1090 aa20.08■□□□□ 0.81
UPF1-210ENST00000600689 SPAG5Q96R06 1193 aa20.08■□□□□ 0.81
UPF1-210ENST00000600689 TRIM51Q9BSJ1 452 aa20.08■□□□□ 0.81
UPF1-210ENST00000600689 CCDC113Q9H0I3 377 aa20.08■□□□□ 0.81
UPF1-210ENST00000600689 ATP6V0A2Q9Y487 856 aa20.08■□□□□ 0.81
UPF1-210ENST00000600689 LCA5LO95447 670 aa20.08■□□□□ 0.8
UPF1-210ENST00000600689 MYCNP04198 464 aaPredicted RBP20.08■□□□□ 0.8
UPF1-210ENST00000600689 TCERG1LQ5VWI1 586 aa20.08■□□□□ 0.8
UPF1-210ENST00000600689 CACNA2D3Q8IZS8 1091 aa20.08■□□□□ 0.8
UPF1-210ENST00000600689 RNF10Q8N5U6 811 aaKnown RBP20.08■□□□□ 0.8
UPF1-210ENST00000600689 TPX2Q9ULW0 747 aaKnown RBP20.08■□□□□ 0.8
UPF1-210ENST00000600689 COL4A3BPQ9Y5P4 624 aa20.08■□□□□ 0.8
UPF1-210ENST00000600689 A6NNZ2 444 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms