RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	CYP2C18	P33260	490 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	AKAP17A	Q02040	695 aa	Known RBP	10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	FPGS	Q05932	587 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	TMEM240	Q5SV17	173 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	C9orf50	Q5SZB4	431 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	CPLX2	Q6PUV4	134 aa	Known RBP	10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	MOXD1	Q6UVY6	613 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	RPAIN	Q86UA6	219 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	NECAB1	Q8N987	351 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	SEPT1	Q8WYJ6	367 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	TBC1D32	Q96NH3	1257 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	HIPK3	Q9H422	1215 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	MLXIP	Q9HAP2	919 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	HDAC6	Q9UBN7	1215 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	LIMCH1	Q9UPQ0	1083 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	MBLAC1	A4D2B0	266 aa	Predicted RBP	10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	IPO5	O00410	1097 aa	Known RBP	10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	CSF2RA	P15509	400 aa		10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	TCF7	P36402	384 aa	Predicted RBP	10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	MKRN4P	Q13434	485 aa	Predicted RBP	10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	ABHD15	Q6UXT9	468 aa		10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	SERINC5	Q86VE9	423 aa		10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	BLID	Q8IZY5	108 aa		10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	TMEM199	Q8N511	208 aa		10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	CAGE1	Q8TC20	777 aa		10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	PPP1R13L	Q8WUF5	828 aa		10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	WNT8B	Q93098	351 aa		10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	LLPH	Q9BRT6	129 aa	Known RBP	10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	PPP1R12C	Q9BZL4	782 aa		10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	RNPEP	Q9H4A4	650 aa		10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	IL23A	Q9NPF7	189 aa		10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	GJB4	Q9NTQ9	266 aa		10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	ORC3	Q9UBD5	711 aa	Predicted RBP	10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	SLC9A2	Q9UBY0	812 aa		10.01	□□□□□ -0.81
SSBP4-208	ENST00000600628	GBF1	Q92538	1859 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	PSMD10	O75832	226 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	CD2BP2	O95400	341 aa	Known RBP	10	□□□□□ -0.81
SSBP4-208	ENST00000600628	CXCL10	P02778	98 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	IQCF3	P0C7M6	154 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	SMIM10L2A	P0DMW4	78 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	SMIM10L2B	P0DMW5	78 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	CYP2C9	P11712	490 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	NLRP5	P59047	1200 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	ACTR2	P61160	394 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	SET	Q01105	290 aa	Predicted RBP	10	□□□□□ -0.81
SSBP4-208	ENST00000600628	PTK7	Q13308	1070 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	PPIG	Q13427	754 aa	Known RBP eCLIP	10	□□□□□ -0.81	3e-8	■■■■□ 19.8
SSBP4-208	ENST00000600628	RABEP1	Q15276	862 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628		Q4G0T1	1027 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	FAM47C	Q5HY64	1035 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	MARCH8	Q5T0T0	291 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	FAM109B	Q6ICB4	259 aa	Predicted RBP	10	□□□□□ -0.81
SSBP4-208	ENST00000600628	PLPPR4	Q7Z2D5	763 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	TRIM50	Q86XT4	487 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	ETNPPL	Q8TBG4	499 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	OXER1	Q8TDS5	423 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	TBCK	Q8TEA7	893 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	AFAP1L1	Q8TED9	768 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	HERVK_113	Q902F9	699 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	SLC5A5	Q92911	643 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	10	□□□□□ -0.81	2e-9	■□□□□ 11.2
SSBP4-208	ENST00000600628	BACH2	Q9BYV9	841 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	JPH1	Q9HDC5	661 aa	Predicted RBP	10	□□□□□ -0.81
SSBP4-208	ENST00000600628	KCNMB3	Q9NPA1	279 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	SH2B1	Q9NRF2	756 aa	Predicted RBP	10	□□□□□ -0.81
SSBP4-208	ENST00000600628	KCNJ14	Q9UNX9	436 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	XIRP2	A4UGR9	3374 aa		10	□□□□□ -0.81
SSBP4-208	ENST00000600628	MICAL3	Q7RTP6	2002 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	EVPL	Q92817	2033 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	ZBTB42	B2RXF5	422 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	NOP56	O00567	594 aa	Known RBP	9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	MSH4	O15457	936 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	SORBS3	O60504	671 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	JAK2	O60674	1132 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	DTNB	O60941	627 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	ATP4A	P20648	1035 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	RFC2	P35250	354 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	ZNF200	P98182	395 aa	Predicted RBP	9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	MBTPS1	Q14703	1052 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	PTGIS	Q16647	500 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	EARS2	Q5JPH6	523 aa	Known RBP	9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	PPP4R3A	Q6IN85	833 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	ZNF746	Q6NUN9	644 aa	Predicted RBP	9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	PLA2G4D	Q86XP0	818 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	ZSCAN31	Q96LW9	406 aa	Predicted RBP	9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	RIT2	Q99578	217 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	SMARCAD1	Q9H4L7	1026 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	TBC1D22B	Q9NU19	505 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	VCAN	P13611	3396 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	LOXHD1	Q8IVV2	1947 aa		9.99	□□□□□ -0.81
SSBP4-208	ENST00000600628	CAND2	O75155	1236 aa		9.98	□□□□□ -0.81
SSBP4-208	ENST00000600628	PARN	O95453	639 aa	Known RBP	9.98	□□□□□ -0.81
SSBP4-208	ENST00000600628	MMP1	P03956	469 aa		9.98	□□□□□ -0.81
SSBP4-208	ENST00000600628	PFKM	P08237	780 aa		9.98	□□□□□ -0.81
SSBP4-208	ENST00000600628	CKB	P12277	381 aa		9.98	□□□□□ -0.81
SSBP4-208	ENST00000600628	SLC26A2	P50443	739 aa		9.98	□□□□□ -0.81
SSBP4-208	ENST00000600628	CCL23	P55773	120 aa		9.98	□□□□□ -0.81
SSBP4-208	ENST00000600628	CHMP4BP1	P59074	171 aa		9.98	□□□□□ -0.81
SSBP4-208	ENST00000600628	SMAD3	P84022	425 aa	Known RBP	9.98	□□□□□ -0.81
SSBP4-208	ENST00000600628	BFSP2	Q13515	415 aa		9.98	□□□□□ -0.81

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