RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 HAS1Q92839 578 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 SENP6Q9GZR1 1112 aaPredicted RBP18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 SMARCAD1Q9H4L7 1026 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 AZI2Q9H6S1 392 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 PCDHA12Q9UN75 941 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 PCDHA10Q9Y5I2 948 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 MROH7Q68CQ1 1323 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 FRMPD3Q5JV73 1810 aa18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 IGKV6D-21A0A0A0MT36 114 aa18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 A0A0U1RQG5 324 aaPredicted RBP18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 GSTTP1A0A1W2PQM5 241 aa18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 LGR5O75473 907 aa18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 PSAPP07602 524 aa18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 MYL3P08590 195 aa18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 ATP2B1P20020 1258 aa18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 SNX17Q15036 470 aa18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 NFRKBQ6P4R8 1299 aa18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 ABHD15Q6UXT9 468 aa18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 FERMT3Q86UX7 667 aa18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 BCAS3Q9H6U6 928 aa18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 STK24Q9Y6E0 443 aa18.68■□□□□ 0.58
SHKBP1-219ENST00000599575 H3BRB1 525 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 CCNE2O96020 404 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 LGALS2P05162 132 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 OR52Z1P0C646 297 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 PTGS1P23219 599 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 ZNF174Q15697 407 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 FAM160B1Q5W0V3 765 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 ARL6IP4Q66PJ3 421 aaKnown RBP18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 SLC43A3Q8NBI5 491 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 SPRYD3Q8NCJ5 442 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 AFAP1L1Q8TED9 768 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 DIS3LQ8TF46 1054 aaKnown RBP18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 TOX2Q96NM4 488 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 C16orf70Q9BSU1 422 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 RAB34Q9BZG1 259 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 TUT1Q9H6E5 874 aaKnown RBP18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 DISC1Q9NRI5 854 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 ERAP1Q9NZ08 941 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 PCDHB6Q9Y5E3 794 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 ATP6V1DQ9Y5K8 247 aa18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 MORC2Q9Y6X9 1032 aaPredicted RBP18.67■□□□□ 0.58
SHKBP1-219ENST00000599575 HAS3O00219 553 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 DKC1O60832 514 aaKnown RBP eCLIP18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 SUPT20HL2P0C7V6 817 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 IRX5P78411 483 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 NUCB2P80303 420 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 PTGDRQ13258 359 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 ITGA7Q13683 1181 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 PDIA5Q14554 519 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 TMEM266Q2M3C6 531 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 SLC39A5Q6ZMH5 540 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 SESTD1Q86VW0 696 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 C4orf32Q8N8J7 132 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 GLG1Q92896 1179 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 VTI1AQ96AJ9 217 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 TTC12Q9H892 705 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 VAV3Q9UKW4 847 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 SAMM50Q9Y512 469 aa18.66■□□□□ 0.58
SHKBP1-219ENST00000599575 ARVCFO00192 962 aa18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 WNT7AO00755 349 aa18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 BRD1O95696 1058 aa18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 F13A1P00488 732 aa18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 CDK7P50613 346 aa18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 STAT5BP51692 787 aa18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 ATP2C1P98194 919 aaPredicted RBP18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 SP4Q02446 784 aa18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 ANKRD33Q7Z3H0 272 aa18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 MIER3Q7Z3K6 550 aa18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 NEK9Q8TD19 979 aa18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 KAT2BQ92831 832 aa18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 FERMT2Q96AC1 680 aa18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 ZNF396Q96N95 335 aaPredicted RBP18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 UNC45AQ9H3U1 944 aa18.65■□□□□ 0.58
SHKBP1-219ENST00000599575 DDX39AO00148 427 aaKnown RBP18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 BACH1O14867 736 aa18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 SORBS3O60504 671 aa18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 TXKP42681 527 aa18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 PSEN2P49810 448 aa18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 FXR2P51116 673 aaKnown RBP eCLIP18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 SPIRE1Q08AE8 756 aa18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 MFSD10Q14728 455 aa18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 EPHA7Q15375 998 aa18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 KIAA0753Q2KHM9 967 aa18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 ATP6V0A1Q93050 837 aa18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 TMEM60Q9H2L4 133 aa18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 ZNF302Q9NR11 478 aa18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 CIZ1Q9ULV3 898 aaPredicted RBP18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 MAFBQ9Y5Q3 323 aaPredicted RBP18.64■□□□□ 0.57
SHKBP1-219ENST00000599575 ZNF286BP0CG31 522 aa18.63■□□□□ 0.57
SHKBP1-219ENST00000599575 GNAT1P11488 350 aa18.63■□□□□ 0.57
SHKBP1-219ENST00000599575 DTHD1Q6ZMT9 781 aa18.63■□□□□ 0.57
SHKBP1-219ENST00000599575 C7orf31Q8N865 590 aa18.63■□□□□ 0.57
SHKBP1-219ENST00000599575 ERMNQ8TAM6 284 aa18.63■□□□□ 0.57
SHKBP1-219ENST00000599575 FAM167AQ96KS9 214 aa18.63■□□□□ 0.57
SHKBP1-219ENST00000599575 DCDC2CA8MYV0 355 aa18.62■□□□□ 0.57
SHKBP1-219ENST00000599575 TLR3O15455 904 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-219ENST00000599575 P4HBP07237 508 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-219ENST00000599575 MUTP22033 750 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms