RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 NDST4Q9H3R1 872 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 RBBP6Q7Z6E9 1792 aaKnown RBP16.05■□□□□ 0.16
VRK3-217ENST00000599538 PITPNM2Q9BZ72 1349 aa16.05■□□□□ 0.16
VRK3-217ENST00000599538 ALAS1P13196 640 aa16.05■□□□□ 0.16
VRK3-217ENST00000599538 TRIM21P19474 475 aaKnown RBP16.05■□□□□ 0.16
VRK3-217ENST00000599538 ANGEL2Q5VTE6 544 aaKnown RBP16.05■□□□□ 0.16
VRK3-217ENST00000599538 CYP26C1Q6V0L0 522 aa16.05■□□□□ 0.16
VRK3-217ENST00000599538 SFR1Q86XK3 245 aa16.05■□□□□ 0.16
VRK3-217ENST00000599538 TPH2Q8IWU9 490 aa16.05■□□□□ 0.16
VRK3-217ENST00000599538 ANKRD7Q92527 254 aa16.05■□□□□ 0.16
VRK3-217ENST00000599538 ERGIC2Q96RQ1 377 aa16.05■□□□□ 0.16
VRK3-217ENST00000599538 POLR3CQ9BUI4 534 aaPredicted RBP16.05■□□□□ 0.16
VRK3-217ENST00000599538 REXO2Q9Y3B8 237 aaKnown RBP16.05■□□□□ 0.16
VRK3-217ENST00000599538 TRAF5O00463 557 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 FLOT1O75955 427 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 LPAR1Q92633 364 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 PCMTD1Q96MG8 357 aaPredicted RBP16.04■□□□□ 0.16
VRK3-217ENST00000599538 UNC45AQ9H3U1 944 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 SLC38A10Q9HBR0 1119 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 PKD2L1Q9P0L9 805 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 SIK3Q9Y2K2 1263 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 GOLGA6L9A6NEM1 432 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 SFI1A8K8P3 1242 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 GAS7O60861 476 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 URI1O94763 535 aaPredicted RBP16.04■□□□□ 0.16
VRK3-217ENST00000599538 SLU7O95391 586 aaKnown RBP16.04■□□□□ 0.16
VRK3-217ENST00000599538 TUBB4AP04350 444 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 HOXD13P35453 343 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 PPP2R5CQ13362 524 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 PURBQ96QR8 312 aaKnown RBP16.04■□□□□ 0.16
VRK3-217ENST00000599538 ZNF577Q9BSK1 485 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 RPAP3Q9H6T3 665 aaPredicted RBP16.04■□□□□ 0.16
VRK3-217ENST00000599538 TFR2Q9UP52 801 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 RABGAP1Q9Y3P9 1069 aa16.04■□□□□ 0.16
VRK3-217ENST00000599538 DDX39AO00148 427 aaKnown RBP16.03■□□□□ 0.16
VRK3-217ENST00000599538 EYA4O95677 639 aa16.03■□□□□ 0.16
VRK3-217ENST00000599538 MYBP10242 640 aa16.03■□□□□ 0.16
VRK3-217ENST00000599538 FKBP3Q00688 224 aaKnown RBP16.03■□□□□ 0.16
VRK3-217ENST00000599538 MAN2A1Q16706 1144 aa16.03■□□□□ 0.16
VRK3-217ENST00000599538 GPIHBP1Q8IV16 184 aa16.03■□□□□ 0.16
VRK3-217ENST00000599538 TSG101Q99816 390 aa16.03■□□□□ 0.16
VRK3-217ENST00000599538 WDR11Q9BZH6 1224 aa16.03■□□□□ 0.16
VRK3-217ENST00000599538 FKBP15Q5T1M5 1219 aa16.03■□□□□ 0.16
VRK3-217ENST00000599538 RINT1Q6NUQ1 792 aa16.03■□□□□ 0.16
VRK3-217ENST00000599538 DLK2Q6UY11 383 aa16.03■□□□□ 0.16
VRK3-217ENST00000599538 WRNIP1Q96S55 665 aa16.03■□□□□ 0.16
VRK3-217ENST00000599538 MXRA8Q9BRK3 442 aa16.03■□□□□ 0.16
VRK3-217ENST00000599538 IKZF4Q9H2S9 585 aa16.03■□□□□ 0.16
VRK3-217ENST00000599538 FAM207AQ9NSI2 230 aaPredicted RBP16.03■□□□□ 0.16
VRK3-217ENST00000599538 PPP1R9AQ9ULJ8 1098 aa16.03■□□□□ 0.16
VRK3-217ENST00000599538 RPTORQ8N122 1335 aa16.02■□□□□ 0.16
VRK3-217ENST00000599538 IPO5O00410 1097 aaKnown RBP16.02■□□□□ 0.16
VRK3-217ENST00000599538 PRPF6O94906 941 aaKnown RBP16.02■□□□□ 0.16
VRK3-217ENST00000599538 CASQ1P31415 396 aa16.02■□□□□ 0.16
VRK3-217ENST00000599538 ARHGAP25P42331 645 aa16.02■□□□□ 0.16
VRK3-217ENST00000599538 HIRAP54198 1017 aaPredicted RBP16.02■□□□□ 0.16
VRK3-217ENST00000599538 KCNA1Q09470 495 aa16.02■□□□□ 0.16
VRK3-217ENST00000599538 B3GNT9Q6UX72 402 aa16.02■□□□□ 0.16
VRK3-217ENST00000599538 SMCR8Q8TEV9 937 aaPredicted RBP16.02■□□□□ 0.16
VRK3-217ENST00000599538 ATG4CQ96DT6 458 aa16.02■□□□□ 0.16
VRK3-217ENST00000599538 ARID3AQ99856 593 aa16.02■□□□□ 0.16
VRK3-217ENST00000599538 TRIM10Q9UDY6 481 aa16.02■□□□□ 0.16
VRK3-217ENST00000599538 COL4A3BPQ9Y5P4 624 aa16.02■□□□□ 0.16
VRK3-217ENST00000599538 EPN1Q9Y6I3 576 aaPredicted RBP16.02■□□□□ 0.16
VRK3-217ENST00000599538 NDUFA10O95299 355 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 FGFR1OPO95684 399 aaKnown RBP16.01■□□□□ 0.15
VRK3-217ENST00000599538 MRPS9P82933 396 aaKnown RBP16.01■□□□□ 0.15
VRK3-217ENST00000599538 HSP90AA2PQ14568 343 aaPredicted RBP16.01■□□□□ 0.15
VRK3-217ENST00000599538 MEA1Q16626 185 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 FOXR2Q6PJQ5 311 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 EPM2AIP1Q7L775 607 aaPredicted RBP16.01■□□□□ 0.15
VRK3-217ENST00000599538 TEX2Q8IWB9 1127 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 SCYL3Q8IZE3 742 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 SYTL5Q8TDW5 730 aaPredicted RBP16.01■□□□□ 0.15
VRK3-217ENST00000599538 ERO1AQ96HE7 468 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 TAAR1Q96RJ0 339 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 EHMT1Q9H9B1 1298 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 KCNH7Q9NS40 1196 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 RIPK3Q9Y572 518 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 PTPRAP18433 802 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 EPS15P42566 896 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 RPS6P62753 249 aaKnown RBP16.01■□□□□ 0.15
VRK3-217ENST00000599538 ZBED6P86452 979 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 KCNMA1Q12791 1236 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 ELF2Q15723 593 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 NUP58Q9BVL2 599 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 MMRN2Q9H8L6 949 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 TUFT1Q9NNX1 390 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 GGA3Q9NZ52 723 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 ZNF112Q9UJU3 913 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 DOCK1Q14185 1865 aa16.01■□□□□ 0.15
VRK3-217ENST00000599538 PLEKP08567 350 aaPredicted RBP16■□□□□ 0.15
VRK3-217ENST00000599538 EIF2AK2P19525 551 aaKnown RBP16■□□□□ 0.15
VRK3-217ENST00000599538 BACE1P56817 501 aa16■□□□□ 0.15
VRK3-217ENST00000599538 CCDC40Q4G0X9 1142 aa16■□□□□ 0.15
VRK3-217ENST00000599538 C1orf186Q6ZWK4 172 aa16■□□□□ 0.15
VRK3-217ENST00000599538 RETREG2Q8NC44 543 aa16■□□□□ 0.15
VRK3-217ENST00000599538 BANK1Q8NDB2 785 aa16■□□□□ 0.15
VRK3-217ENST00000599538 STK24Q9Y6E0 443 aa16■□□□□ 0.15
VRK3-217ENST00000599538 POLR2AP24928 1970 aaKnown RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms