RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 LRRC63Q05C16 580 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 EMBQ6PCB8 327 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 POTEGQ6S5H5 508 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 POTEEQ6S8J3 1075 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 LRRC55Q6ZSA7 311 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 MSL3Q8N5Y2 521 aaKnown RBP16.76■□□□□ 0.27
UPF1-204ENST00000596842 DPH5Q9H2P9 285 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 BCORQ6W2J9 1755 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 DOCK2Q92608 1830 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 USP17L10C9JJH3 530 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 RAD51CO43502 376 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 RPS6KA5O75582 802 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 RPS6KA1Q15418 735 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 STK17AQ9UEE5 414 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 PCDHB13Q9Y5F0 798 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 NEDD1Q8NHV4 660 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 CASKIN2Q8WXE0 1202 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 MXD3Q9BW11 206 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 GOPCQ9HD26 462 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 ABCB4P21439 1286 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 NF2P35240 595 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 USH1GQ495M9 461 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 FIGNQ5HY92 759 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 CCNL1Q9UK58 526 aaPredicted RBP16.75■□□□□ 0.27
UPF1-204ENST00000596842 PLAAQ9Y263 795 aa16.75■□□□□ 0.27
UPF1-204ENST00000596842 A0A087WUV0 522 aaPredicted RBP16.74■□□□□ 0.27
UPF1-204ENST00000596842 SERPING1P05155 500 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 TCP10Q12799 353 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 KCNH2Q12809 1159 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 GJB7Q6PEY0 223 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 CCDC65Q8IXS2 484 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 PSTPIP2Q9H939 334 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 EMILIN3Q9NT22 766 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 PVALEFA0A1B0GWK0 134 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 PLA2G4BP0C869 781 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 LLGL1Q15334 1064 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 HGSNATQ68CP4 663 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 CNBD1Q8NA66 436 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 ARHGEF1Q92888 912 aaKnown RBP16.74■□□□□ 0.27
UPF1-204ENST00000596842 ATP6V0A2Q9Y487 856 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.74■□□□□ 0.27
UPF1-204ENST00000596842 SPATA31A1Q5TZJ5 1347 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 G3V3G9 751 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 NR1D1P20393 614 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 IFT88Q13099 833 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 DCAF8Q5TAQ9 597 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 ADGRF4Q8IZF3 695 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 RTFDC1Q9BY42 306 aaPredicted RBP16.74■□□□□ 0.27
UPF1-204ENST00000596842 BCAS3Q9H6U6 928 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 CD209Q9NNX6 404 aa16.74■□□□□ 0.27
UPF1-204ENST00000596842 ZNF233A6NK53 670 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 CACNB3P54284 484 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 PRR16Q569H4 304 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 ANKRD36CQ5JPF3 1778 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 MYO1FO00160 1098 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 CETN3O15182 167 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 CDR1P51861 262 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 GPSM2P81274 684 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 PLS1Q14651 629 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 MTMR9Q96QG7 549 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 CEP72Q9P209 647 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 CDK17Q00537 523 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 PTK2Q05397 1052 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 NAA25Q14CX7 972 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 UHMK1Q8TAS1 419 aaKnown RBP16.73■□□□□ 0.27
UPF1-204ENST00000596842 IKZF4Q9H2S9 585 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 NARFQ9UHQ1 456 aa16.73■□□□□ 0.27
UPF1-204ENST00000596842 COPB2P35606 906 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 TNNC1P63316 161 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 NOL4O94818 638 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 CTNNA1P35221 906 aaKnown RBP16.72■□□□□ 0.27
UPF1-204ENST00000596842 FAM43BQ6ZT52 329 aaPredicted RBP16.72■□□□□ 0.27
UPF1-204ENST00000596842 C16orf86Q6ZW13 317 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 CUL5Q93034 780 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 TLDC2A0PJX2 215 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 TMOD1P28289 359 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 CASP5P51878 434 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 ALS2CLQ60I27 953 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 RDH13Q8NBN7 331 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 U2AF1L4Q8WU68 220 aaKnown RBP16.72■□□□□ 0.27
UPF1-204ENST00000596842 KAT2BQ92831 832 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 C8orf37Q96NL8 207 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 RIC8AQ9NPQ8 531 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 AMACRQ9UHK6 382 aa16.72■□□□□ 0.27
UPF1-204ENST00000596842 CHMP2AO43633 222 aa16.71■□□□□ 0.27
UPF1-204ENST00000596842 SLC18A3Q16572 532 aa16.71■□□□□ 0.27
UPF1-204ENST00000596842 DAAM2Q86T65 1068 aa16.71■□□□□ 0.27
UPF1-204ENST00000596842 HDAC9Q9UKV0 1011 aa16.71■□□□□ 0.27
UPF1-204ENST00000596842 KRIT1O00522 736 aa16.71■□□□□ 0.27
UPF1-204ENST00000596842 MRPL12P52815 198 aaKnown RBP16.71■□□□□ 0.27
UPF1-204ENST00000596842 ZNF662Q6ZS27 426 aa16.71■□□□□ 0.27
UPF1-204ENST00000596842 PEX26Q7Z412 305 aa16.71■□□□□ 0.27
UPF1-204ENST00000596842 CELF4Q9BZC1 486 aaKnown RBP16.71■□□□□ 0.27
UPF1-204ENST00000596842 PLCH1Q4KWH8 1693 aa16.71■□□□□ 0.27
UPF1-204ENST00000596842 GRIN2DO15399 1336 aa16.71■□□□□ 0.27
UPF1-204ENST00000596842 LRP5O75197 1615 aa16.71■□□□□ 0.27
UPF1-204ENST00000596842 LSP1P33241 339 aa16.71■□□□□ 0.27
UPF1-204ENST00000596842 RBM5P52756 815 aaKnown RBP eCLIP16.71■□□□□ 0.27
UPF1-204ENST00000596842 SHROOM1Q2M3G4 852 aaPredicted RBP16.71■□□□□ 0.27
UPF1-204ENST00000596842 JMJD4Q9H9V9 463 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms