RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TRIM50Q86XT4 487 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 CCDC155Q8N6L0 562 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 CYP2W1Q8TAV3 490 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 DHX38Q92620 1227 aaKnown RBP17.24■□□□□ 0.35
TRIM28-205ENST00000595028 TIFAQ96CG3 184 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 GAS2L1Q99501 681 aaPredicted RBP17.24■□□□□ 0.35
TRIM28-205ENST00000595028 TUT1Q9H6E5 874 aaKnown RBP17.24■□□□□ 0.35
TRIM28-205ENST00000595028 KCNH7Q9NS40 1196 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 VPS54Q9P1Q0 977 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 ZNF215Q9UL58 517 aaPredicted RBP17.24■□□□□ 0.35
TRIM28-205ENST00000595028 TET1Q8NFU7 2136 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 CHD7Q9P2D1 2997 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 DEXIO95424 95 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 SEC24BO95487 1268 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 HOXC8P31273 242 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 RFC2P35250 354 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 SSRP1Q08945 709 aaKnown RBP17.23■□□□□ 0.35
TRIM28-205ENST00000595028 RBL2Q08999 1139 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 MCTP2Q6DN12 878 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 BICD2Q8TD16 824 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 AFAP1L1Q8TED9 768 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 CRYGNQ8WXF5 182 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 HERVK_113Q902F9 699 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 VWCEQ96DN2 955 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 JPH1Q9HDC5 661 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-205ENST00000595028 SH3GLB2Q9NR46 395 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 TPCN1Q9ULQ1 816 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 KAT6AQ92794 2004 aa17.23■□□□□ 0.35
TRIM28-205ENST00000595028 GBF1Q92538 1859 aa17.22■□□□□ 0.35
TRIM28-205ENST00000595028 PFKMP08237 780 aa17.22■□□□□ 0.35
TRIM28-205ENST00000595028 TCF7P36402 384 aaPredicted RBP17.22■□□□□ 0.35
TRIM28-205ENST00000595028 AK2P54819 239 aa17.22■□□□□ 0.35
TRIM28-205ENST00000595028 SCRN1Q12765 414 aa17.22■□□□□ 0.35
TRIM28-205ENST00000595028 ANKRD1Q15327 319 aa17.22■□□□□ 0.35
TRIM28-205ENST00000595028 UTP14CQ5TAP6 766 aaKnown RBP17.22■□□□□ 0.35
TRIM28-205ENST00000595028 NIPA1Q7RTP0 329 aa17.22■□□□□ 0.35
TRIM28-205ENST00000595028 RPUSD2Q8IZ73 545 aaKnown RBP17.22■□□□□ 0.35
TRIM28-205ENST00000595028 RETREG2Q8NC44 543 aa17.22■□□□□ 0.35
TRIM28-205ENST00000595028 RASGRP4Q8TDF6 673 aa17.22■□□□□ 0.35
TRIM28-205ENST00000595028 MTIF3Q9H2K0 278 aaKnown RBP17.22■□□□□ 0.35
TRIM28-205ENST00000595028 NFASCO94856 1347 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 TCF20Q9UGU0 1960 aaKnown RBP17.21■□□□□ 0.35
TRIM28-205ENST00000595028 C17orf102A2RUQ5 167 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 FAM86B1E9PN63 330 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 MEIS1O00470 390 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 PFKFB2O60825 505 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 CDKL5O76039 1030 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 FGBP02675 491 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 CYP3A4P08684 503 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 FAM86B2P0C5J1 330 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 IQCF3P0C7M6 154 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 SMIM10L2AP0DMW4 78 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 SMIM10L2BP0DMW5 78 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 ARP10275 920 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 ZNF76P36508 570 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 ZNF200P98182 395 aaPredicted RBP17.21■□□□□ 0.35
TRIM28-205ENST00000595028 PTK7Q13308 1070 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 HIC1Q14526 733 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 IL27Q8NEV9 243 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 SDF4Q9BRK5 362 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 C1QTNF1Q9BXJ1 281 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 SLKQ9H2G2 1235 aaPredicted RBP17.21■□□□□ 0.35
TRIM28-205ENST00000595028 PRDM12Q9H4Q4 367 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 AGO4Q9HCK5 861 aaKnown RBP17.21■□□□□ 0.35
TRIM28-205ENST00000595028 CXXC1Q9P0U4 656 aaPredicted RBP17.21■□□□□ 0.35
TRIM28-205ENST00000595028 PIEZO1Q92508 2521 aa17.21■□□□□ 0.35
TRIM28-205ENST00000595028 EMSYQ7Z589 1322 aa17.21■□□□□ 0.34
TRIM28-205ENST00000595028 STK36Q9NRP7 1315 aa17.21■□□□□ 0.34
TRIM28-205ENST00000595028 IGLV3-22A0A075B6J6 115 aa17.2■□□□□ 0.34
TRIM28-205ENST00000595028 GSTTP1A0A1W2PQM5 241 aa17.2■□□□□ 0.34
TRIM28-205ENST00000595028 SELPP16109 830 aa17.2■□□□□ 0.34
TRIM28-205ENST00000595028 ITGB3BPQ13352 177 aaPredicted RBP17.2■□□□□ 0.34
TRIM28-205ENST00000595028 CCDC85BQ15834 202 aaPredicted RBP17.2■□□□□ 0.34
TRIM28-205ENST00000595028 TRIM71Q2Q1W2 868 aaKnown RBP17.2■□□□□ 0.34
TRIM28-205ENST00000595028 C8orf34Q49A92 452 aa17.2■□□□□ 0.34
TRIM28-205ENST00000595028 LRRC8DQ7L1W4 858 aa17.2■□□□□ 0.34
TRIM28-205ENST00000595028 OTOP2Q7RTS6 562 aa17.2■□□□□ 0.34
TRIM28-205ENST00000595028 DEFB128Q7Z7B8 93 aa17.2■□□□□ 0.34
TRIM28-205ENST00000595028 SERINC5Q86VE9 423 aa17.2■□□□□ 0.34
TRIM28-205ENST00000595028 FAM177A1Q8N128 213 aaPredicted RBP17.2■□□□□ 0.34
TRIM28-205ENST00000595028 SEPT1Q8WYJ6 367 aa17.2■□□□□ 0.34
TRIM28-205ENST00000595028 WNT8BQ93098 351 aa17.2■□□□□ 0.34
TRIM28-205ENST00000595028 NECAB3Q96P71 396 aaPredicted RBP17.2■□□□□ 0.34
TRIM28-205ENST00000595028 SLC9A2Q9UBY0 812 aa17.2■□□□□ 0.34
TRIM28-205ENST00000595028 CKBP12277 381 aa17.19■□□□□ 0.34
TRIM28-205ENST00000595028 NLRP5P59047 1200 aa17.19■□□□□ 0.34
TRIM28-205ENST00000595028 SETQ01105 290 aaPredicted RBP17.19■□□□□ 0.34
TRIM28-205ENST00000595028 PLA2G4DQ86XP0 818 aa17.19■□□□□ 0.34
TRIM28-205ENST00000595028 PCDHA4Q9UN74 947 aa17.19■□□□□ 0.34
TRIM28-205ENST00000595028 LGR5O75473 907 aa17.18■□□□□ 0.34
TRIM28-205ENST00000595028 PBX2P40425 430 aa17.18■□□□□ 0.34
TRIM28-205ENST00000595028 ACTR2P61160 394 aa17.18■□□□□ 0.34
TRIM28-205ENST00000595028 ADGRE1Q14246 886 aa17.18■□□□□ 0.34
TRIM28-205ENST00000595028 TRAF7Q6Q0C0 670 aa17.18■□□□□ 0.34
TRIM28-205ENST00000595028 DAGLBQ8NCG7 672 aa17.18■□□□□ 0.34
TRIM28-205ENST00000595028 LMBR1Q8WVP7 490 aa17.18■□□□□ 0.34
TRIM28-205ENST00000595028 ATP6V0A1Q93050 837 aa17.18■□□□□ 0.34
TRIM28-205ENST00000595028 AIFM3Q96NN9 605 aa17.18■□□□□ 0.34
TRIM28-205ENST00000595028 PBX4Q9BYU1 374 aa17.18■□□□□ 0.34
TRIM28-205ENST00000595028 RNPEPQ9H4A4 650 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms