RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	CTTNBP2NL	Q9P2B4	639 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	DDX25	Q9UHL0	483 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	LEMD3	Q9Y2U8	911 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	C1orf167	Q5SNV9	1468 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	ESYT2	A0FGR8	921 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PJA2	O43164	708 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	DKC1	O60832	514 aa	Known RBP eCLIP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PALM	O75781	387 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PLEKHA8P1	O95397	391 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	AGT	P01019	485 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	TROVE2	P10155	538 aa	Known RBP eCLIP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	GHR	P10912	638 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	CHRNA3	P32297	505 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	ZNF131	P52739	623 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	NUBP1	P53384	320 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	RPS8	P62241	208 aa	Known RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	IL9R	Q01113	521 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	STRN3	Q13033	797 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	NAB2	Q15742	525 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PTGIS	Q16647	500 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	EDRF1	Q3B7T1	1238 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	FAM47A	Q5JRC9	791 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	LIN9	Q5TKA1	542 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PI16	Q6UXB8	463 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	FRMD5	Q7Z6J6	570 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	CCDC105	Q8IYK2	499 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	U2AF1L4	Q8WU68	220 aa	Known RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	RAD54L	Q92698	747 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	SMC6	Q96SB8	1091 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	CCT8L2	Q96SF2	557 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	LRRC1	Q9BTT6	524 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	IQCG	Q9H095	443 aa	Known RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	CXorf56	Q9H5V9	222 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	SPATA31A3	Q5VYP0	1347 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	USP54	Q70EL1	1684 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	ANKRD62	A6NC57	917 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	SLC16A3	O15427	465 aa	Known RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PRKAB2	O43741	272 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	SHOX2	O60902	331 aa	Predicted RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	SRGAP2	O75044	1071 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	HNRNPH1	P31943	449 aa	Known RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PCK1	P35558	622 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PSMC2	P35998	433 aa	Known RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	NPEPPS	P55786	919 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	IRX1	P78414	480 aa	Predicted RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	DR1	Q01658	176 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	SCARF1	Q14162	830 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	RBBP5	Q15291	538 aa	Known RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	FAM83B	Q5T0W9	1011 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	ALKBH5	Q6P6C2	394 aa	Known RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	TSHZ1	Q6ZSZ6	1077 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	SYDE1	Q6ZW31	735 aa	Predicted RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PHLDB2	Q86SQ0	1253 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	STAG2	Q8N3U4	1231 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	N4BP2L2	Q92802	583 aa	Predicted RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	VCX3B	Q9H321	246 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	VCPKMT	Q9H867	229 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PPCS	Q9HAB8	311 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	3.84	□□□□□ -1.79	8e-8	■□□□□ 9.4
VMP1-216	ENST00000592790	KBTBD4	Q9NVX7	518 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	HDAC6	Q9UBN7	1215 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	NOVA2	Q9UNW9	492 aa	Known RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	CNTNAP5	Q8WYK1	1306 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	hCG_1642624	A0A1W2PR95	340 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	TRIM49B	A6NDI0	452 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	CIB2	O75838	187 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	ADAMTS2	O95450	1211 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	NR2F2	P24468	414 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	CTNNA2	P26232	953 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	HNRNPH3	P31942	346 aa	Known RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	GUCY1A2	P33402	732 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PHB	P35232	272 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	AMPD2	Q01433	879 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	ACTN3	Q08043	901 aa	Predicted RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	ITIH4	Q14624	930 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	CRYM	Q14894	314 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	DDB1	Q16531	1140 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PTPN21	Q16825	1174 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PHLDB3	Q6NSJ2	640 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	FOXP4	Q8IVH2	680 aa	Predicted RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	TBCK	Q8TEA7	893 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	HOOK2	Q96ED9	719 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	CCDC17	Q96LX7	622 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	ROPN1B	Q9BZX4	212 aa	Predicted RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	TRIM6	Q9C030	488 aa	Predicted RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	ROPN1	Q9HAT0	212 aa	Predicted RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	A1CF	Q9NQ94	594 aa	Known RBP	3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	EMILIN3	Q9NT22	766 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	INTS13	Q9NVM9	706 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	ASIC3	Q9UHC3	531 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	PNMA2	Q9UL42	364 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	AXIN2	Q9Y2T1	843 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	RABGAP1	Q9Y3P9	1069 aa		3.84	□□□□□ -1.79
VMP1-216	ENST00000592790	XDH	P47989	1333 aa		3.84	□□□□□ -1.8
VMP1-216	ENST00000592790	TMEM94	Q12767	1356 aa		3.84	□□□□□ -1.8
VMP1-216	ENST00000592790	TUBGCP6	Q96RT7	1819 aa		3.84	□□□□□ -1.8
VMP1-216	ENST00000592790		A0A0A6YYK5	440 aa	Predicted RBP	3.84	□□□□□ -1.8
VMP1-216	ENST00000592790	LRRD1	A4D1F6	860 aa		3.84	□□□□□ -1.8
VMP1-216	ENST00000592790	RASGRF2	O14827	1237 aa		3.84	□□□□□ -1.8
VMP1-216	ENST00000592790	DCTN3	O75935	186 aa		3.84	□□□□□ -1.8

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