RNA–Protein interactions for RNA: ENST00000591849.5

BRCA1-227, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-227ENST00000591849 HOXD8P13378 290 aaPredicted RBP11.43□□□□□ -0.58
BRCA1-227ENST00000591849 CSF2RAP15509 400 aa11.43□□□□□ -0.58
BRCA1-227ENST00000591849 MARK3P27448 753 aa11.43□□□□□ -0.58
BRCA1-227ENST00000591849 KRT2P35908 639 aa11.43□□□□□ -0.58
BRCA1-227ENST00000591849 SAFBQ15424 915 aaKnown RBP eCLIP11.43□□□□□ -0.58
BRCA1-227ENST00000591849 GDF6Q6KF10 455 aaPredicted RBP11.43□□□□□ -0.58
BRCA1-227ENST00000591849 SESTD1Q86VW0 696 aa11.43□□□□□ -0.58
BRCA1-227ENST00000591849 RPUSD2Q8IZ73 545 aaKnown RBP11.43□□□□□ -0.58
BRCA1-227ENST00000591849 NSUN7Q8NE18 718 aaKnown RBP11.43□□□□□ -0.58
BRCA1-227ENST00000591849 IL27Q8NEV9 243 aa11.43□□□□□ -0.58
BRCA1-227ENST00000591849 RNPC3Q96LT9 517 aaKnown RBP11.43□□□□□ -0.58
BRCA1-227ENST00000591849 LLPHQ9BRT6 129 aaKnown RBP11.43□□□□□ -0.58
BRCA1-227ENST00000591849 C16orf70Q9BSU1 422 aa11.43□□□□□ -0.58
BRCA1-227ENST00000591849 PHF20Q9BVI0 1012 aa11.43□□□□□ -0.58
BRCA1-227ENST00000591849 NOC4LQ9BVI4 516 aaKnown RBP11.43□□□□□ -0.58
BRCA1-227ENST00000591849 SMARCAD1Q9H4L7 1026 aa11.43□□□□□ -0.58
BRCA1-227ENST00000591849 TBC1D22BQ9NU19 505 aa11.43□□□□□ -0.58
BRCA1-227ENST00000591849 GSTTP1A0A1W2PQM5 241 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 HAS3O00219 553 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 FGBP02675 491 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 SMIM10L2AP0DMW4 78 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 SMIM10L2BP0DMW5 78 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 ACTR2P61160 394 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 GNL2Q13823 731 aaKnown RBP11.42□□□□□ -0.58
BRCA1-227ENST00000591849 SHHQ15465 462 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 INF2Q27J81 1249 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 LETM2Q2VYF4 491 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 FAM160B1Q5W0V3 765 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 MIS18BP1Q6P0N0 1132 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 PIK3AP1Q6ZUJ8 805 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 TRIM50Q86XT4 487 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 SLC17A8Q8NDX2 589 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 ATP6V0A1Q93050 837 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 KIF2CQ99661 725 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 FTOQ9C0B1 505 aaKnown RBP eCLIP11.42□□□□□ -0.58
BRCA1-227ENST00000591849 MTIF3Q9H2K0 278 aaKnown RBP11.42□□□□□ -0.58
BRCA1-227ENST00000591849 ERAP1Q9NZ08 941 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 SAMM50Q9Y512 469 aa11.42□□□□□ -0.58
BRCA1-227ENST00000591849 ACRP10323 421 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 FDPSP14324 419 aaKnown RBP11.41□□□□□ -0.58
BRCA1-227ENST00000591849 CIITAP33076 1130 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 MCM2P49736 904 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 STAT5BP51692 787 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 HMGN5P82970 282 aaKnown RBP11.41□□□□□ -0.58
BRCA1-227ENST00000591849 ZNF200P98182 395 aaPredicted RBP11.41□□□□□ -0.58
BRCA1-227ENST00000591849 PTK7Q13308 1070 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 ITGB3BPQ13352 177 aaPredicted RBP11.41□□□□□ -0.58
BRCA1-227ENST00000591849 PSRC1Q6PGN9 363 aaPredicted RBP11.41□□□□□ -0.58
BRCA1-227ENST00000591849 DEFB128Q7Z7B8 93 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 CKAP2LQ8IYA6 745 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 CAGE1Q8TC20 777 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 SCLYQ96I15 445 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 LRCH3Q96II8 777 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 C8orf76Q96K31 380 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 NAP1L4Q99733 375 aaKnown RBP11.41□□□□□ -0.58
BRCA1-227ENST00000591849 RNPEPQ9H4A4 650 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 IL23AQ9NPF7 189 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 GJB4Q9NTQ9 266 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 SETD4Q9NVD3 440 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 TRPC6Q9Y210 931 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 KIF3AQ9Y496 699 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 TELO2Q9Y4R8 837 aa11.41□□□□□ -0.58
BRCA1-227ENST00000591849 UNC80Q8N2C7 3258 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 UMODL1Q5DID0 1318 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 IGLV3-22A0A075B6J6 115 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 ZBBXA8MT70 800 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 GAS7O60861 476 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 PSAPP07602 524 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 ACTN1P12814 892 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 SELPP16109 830 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 IGBP1P78318 339 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 KRT76Q01546 638 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 GUCY1B3Q02153 619 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 PPFIA1Q13136 1202 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 LRIT3Q3SXY7 679 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 C9orf50Q5SZB4 431 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 KRT40Q6A162 431 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 SWSAP1Q6NVH7 229 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 ZNF365Q70YC5 407 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 NEK8Q86SG6 692 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 OXER1Q8TDS5 423 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 AFAP1L1Q8TED9 768 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 CRYGNQ8WXF5 182 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 TBC1D32Q96NH3 1257 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 TEKT3Q9BXF9 490 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 ZNF302Q9NR11 478 aa11.4□□□□□ -0.58
BRCA1-227ENST00000591849 DDX25Q9UHL0 483 aaKnown RBP11.4□□□□□ -0.58
BRCA1-227ENST00000591849 NRCAMQ92823 1304 aa11.39□□□□□ -0.59
BRCA1-227ENST00000591849 RRN3P2A6NIE6 340 aa11.39□□□□□ -0.59
BRCA1-227ENST00000591849 PITPNM1O00562 1244 aa11.39□□□□□ -0.59
BRCA1-227ENST00000591849 MSH4O15457 936 aa11.39□□□□□ -0.59
BRCA1-227ENST00000591849 TREHO43280 583 aa11.39□□□□□ -0.59
BRCA1-227ENST00000591849 CHMP2AO43633 222 aa11.39□□□□□ -0.59
BRCA1-227ENST00000591849 CCNT1O60563 726 aaKnown RBP11.39□□□□□ -0.59
BRCA1-227ENST00000591849 BAG4O95429 457 aaKnown RBP11.39□□□□□ -0.59
BRCA1-227ENST00000591849 TDP2O95551 362 aa11.39□□□□□ -0.59
BRCA1-227ENST00000591849 MMP1P03956 469 aa11.39□□□□□ -0.59
BRCA1-227ENST00000591849 IQCF3P0C7M6 154 aa11.39□□□□□ -0.59
BRCA1-227ENST00000591849 GCFC2P16383 781 aaKnown RBP11.39□□□□□ -0.59
BRCA1-227ENST00000591849 RFC2P35250 354 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms