RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 PRO3102Q9H379 93 aa13.5□□□□□ -0.25
LIG3-213ENST00000590630 TRMT13Q9NUP7 481 aaKnown RBP13.5□□□□□ -0.25
LIG3-213ENST00000590630 GTF2IRD1Q9UHL9 959 aa13.5□□□□□ -0.25
LIG3-213ENST00000590630 KIF3AQ9Y496 699 aa13.5□□□□□ -0.25
LIG3-213ENST00000590630 TANC1Q9C0D5 1861 aa13.49□□□□□ -0.25
LIG3-213ENST00000590630 EMSYQ7Z589 1322 aa13.49□□□□□ -0.25
LIG3-213ENST00000590630 GSTTP1A0A1W2PQM5 241 aa13.49□□□□□ -0.25
LIG3-213ENST00000590630 DHX15O43143 795 aaKnown RBP13.49□□□□□ -0.25
LIG3-213ENST00000590630 TIMP1P01033 207 aa13.49□□□□□ -0.25
LIG3-213ENST00000590630 GCFC2P16383 781 aaKnown RBP13.49□□□□□ -0.25
LIG3-213ENST00000590630 ACTR2P61160 394 aa13.49□□□□□ -0.25
LIG3-213ENST00000590630 MDM2Q00987 491 aaPredicted RBP13.49□□□□□ -0.25
LIG3-213ENST00000590630 NR5A1Q13285 461 aa13.49□□□□□ -0.25
LIG3-213ENST00000590630 SAFBQ15424 915 aaKnown RBP eCLIP13.49□□□□□ -0.25
LIG3-213ENST00000590630 TRIM50Q86XT4 487 aa13.49□□□□□ -0.25
LIG3-213ENST00000590630 DIS3L2Q8IYB7 885 aaKnown RBP13.49□□□□□ -0.25
LIG3-213ENST00000590630 MBOAT7Q96N66 472 aa13.49□□□□□ -0.25
LIG3-213ENST00000590630 HIPK3Q9H422 1215 aa13.49□□□□□ -0.25
LIG3-213ENST00000590630 HDAC6Q9UBN7 1215 aa13.49□□□□□ -0.25
LIG3-213ENST00000590630 TCEAL9Q9UHQ7 104 aa13.49□□□□□ -0.25
LIG3-213ENST00000590630 COLQQ9Y215 455 aaPredicted RBP13.49□□□□□ -0.25
LIG3-213ENST00000590630 NOD1Q9Y239 953 aa13.49□□□□□ -0.25
LIG3-213ENST00000590630 TELO2Q9Y4R8 837 aa13.49□□□□□ -0.25
LIG3-213ENST00000590630 A0A1W2PPC1 479 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 BTBD18B2RXH4 712 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 MSH4O15457 936 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 LGR5O75473 907 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 TDP2O95551 362 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 ITGB8P26012 769 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 FOSBP53539 338 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 KRT76Q01546 638 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 PTGISQ16647 500 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 LETM2Q2VYF4 491 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 UTP14CQ5TAP6 766 aaKnown RBP13.48□□□□□ -0.25
LIG3-213ENST00000590630 PPP4R3AQ6IN85 833 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 GDF6Q6KF10 455 aaPredicted RBP13.48□□□□□ -0.25
LIG3-213ENST00000590630 ZNF746Q6NUN9 644 aaPredicted RBP13.48□□□□□ -0.25
LIG3-213ENST00000590630 SMAP1Q8IYB5 467 aaPredicted RBP13.48□□□□□ -0.25
LIG3-213ENST00000590630 FBXO18Q8NFZ0 1043 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 GLG1Q92896 1179 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 BADQ92934 168 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 RIT2Q99578 217 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 NOC4LQ9BVI4 516 aaKnown RBP13.48□□□□□ -0.25
LIG3-213ENST00000590630 UBE2OQ9C0C9 1292 aaKnown RBP13.48□□□□□ -0.25
LIG3-213ENST00000590630 SMARCAD1Q9H4L7 1026 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 AZI2Q9H6S1 392 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 ERAP1Q9NZ08 941 aa13.48□□□□□ -0.25
LIG3-213ENST00000590630 DDX25Q9UHL0 483 aaKnown RBP13.48□□□□□ -0.25
LIG3-213ENST00000590630 DDX39AO00148 427 aaKnown RBP13.47□□□□□ -0.25
LIG3-213ENST00000590630 PITPNM1O00562 1244 aa13.47□□□□□ -0.25
LIG3-213ENST00000590630 ATG7O95352 703 aa13.47□□□□□ -0.25
LIG3-213ENST00000590630 CCNE2O96020 404 aa13.47□□□□□ -0.25
LIG3-213ENST00000590630 SMIM10L2AP0DMW4 78 aa13.47□□□□□ -0.25
LIG3-213ENST00000590630 SMIM10L2BP0DMW5 78 aa13.47□□□□□ -0.25
LIG3-213ENST00000590630 HOXC8P31273 242 aa13.47□□□□□ -0.25
LIG3-213ENST00000590630 SLC26A2P50443 739 aa13.47□□□□□ -0.25
LIG3-213ENST00000590630 MFSD5Q6N075 450 aa13.47□□□□□ -0.25
LIG3-213ENST00000590630 PLPPR4Q7Z2D5 763 aa13.47□□□□□ -0.25
LIG3-213ENST00000590630 CCDC155Q8N6L0 562 aa13.47□□□□□ -0.25
LIG3-213ENST00000590630 PPP1R13LQ8WUF5 828 aa13.47□□□□□ -0.25
LIG3-213ENST00000590630 SLC5A5Q92911 643 aa13.47□□□□□ -0.25
LIG3-213ENST00000590630 FOXP1Q9H334 677 aaPredicted RBP13.47□□□□□ -0.25
LIG3-213ENST00000590630 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.47□□□□□ -0.25
LIG3-213ENST00000590630 IGKV6D-21A0A0A0MT36 114 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 C17orf102A2RUQ5 167 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 CCNT1O60563 726 aaKnown RBP13.46□□□□□ -0.25
LIG3-213ENST00000590630 GAS7O60861 476 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 GNAT1P11488 350 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 CYP2C9P11712 490 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 GUCY1B3Q02153 619 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 FPGSQ05932 587 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 BFSP2Q13515 415 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 EARS2Q5JPH6 523 aaKnown RBP13.46□□□□□ -0.25
LIG3-213ENST00000590630 LRCH2Q5VUJ6 765 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 MIS18BP1Q6P0N0 1132 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 ABHD15Q6UXT9 468 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 TMEM199Q8N511 208 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 ETNPPLQ8TBG4 499 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 CAGE1Q8TC20 777 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 TNPO1Q92973 898 aaKnown RBP13.46□□□□□ -0.25
LIG3-213ENST00000590630 CTAGE1Q96RT6 745 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 TEKT3Q9BXF9 490 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 PPP1R12CQ9BZL4 782 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 RNPEPQ9H4A4 650 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 PCDH10Q9P2E7 1040 aa13.46□□□□□ -0.25
LIG3-213ENST00000590630 NRCAMQ92823 1304 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 FAM205CA6NFA0 338 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 WDR64B1ANS9 1081 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 BACH1O14867 736 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 TBX3O15119 743 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 SLC37A4O43826 429 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 PSMD10O75832 226 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 SFNP31947 248 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 CYP2C18P33260 490 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 STAT5BP51692 787 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 PTK7Q13308 1070 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 PPIGQ13427 754 aaKnown RBP eCLIP13.45□□□□□ -0.264e-7■□□□□ 11.1
LIG3-213ENST00000590630 FAM160B1Q5W0V3 765 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 AFAP1L1Q8TED9 768 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 ATP6V0A1Q93050 837 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms