RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CNTNAP5Q8WYK1 1306 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 SMCO2A6NFE2 343 aa12□□□□□ -0.49
LIG3-212ENST00000590181 H3BRB1 525 aa12□□□□□ -0.49
LIG3-212ENST00000590181 BAIAP3O94812 1187 aa12□□□□□ -0.49
LIG3-212ENST00000590181 ARHGEF15O94989 841 aa12□□□□□ -0.49
LIG3-212ENST00000590181 SCG2P13521 617 aa12□□□□□ -0.49
LIG3-212ENST00000590181 IFNAR1P17181 557 aa12□□□□□ -0.49
LIG3-212ENST00000590181 POU3F3P20264 500 aaPredicted RBP12□□□□□ -0.49
LIG3-212ENST00000590181 UBA1P22314 1058 aaKnown RBP12□□□□□ -0.49
LIG3-212ENST00000590181 PSEN2P49810 448 aa12□□□□□ -0.49
LIG3-212ENST00000590181 MFSD10Q14728 455 aa12□□□□□ -0.49
LIG3-212ENST00000590181 KIAA0753Q2KHM9 967 aa12□□□□□ -0.49
LIG3-212ENST00000590181 TMEM31Q5JXX7 168 aa12□□□□□ -0.49
LIG3-212ENST00000590181 GALNT17Q6IS24 598 aa12□□□□□ -0.49
LIG3-212ENST00000590181 CCDC82Q8N4S0 544 aa12□□□□□ -0.49
LIG3-212ENST00000590181 PIBF1Q8WXW3 757 aa12□□□□□ -0.49
LIG3-212ENST00000590181 KAT2BQ92831 832 aa12□□□□□ -0.49
LIG3-212ENST00000590181 BRF1Q92994 677 aa12□□□□□ -0.49
LIG3-212ENST00000590181 ZMYND12Q9H0C1 365 aa12□□□□□ -0.49
LIG3-212ENST00000590181 TUT1Q9H6E5 874 aaKnown RBP12□□□□□ -0.49
LIG3-212ENST00000590181 JADE2Q9NQC1 790 aa12□□□□□ -0.49
LIG3-212ENST00000590181 PCDHA6Q9UN73 950 aa12□□□□□ -0.49
LIG3-212ENST00000590181 PCDHA8Q9Y5H6 950 aa12□□□□□ -0.49
LIG3-212ENST00000590181 UBIAD1Q9Y5Z9 338 aa12□□□□□ -0.49
LIG3-212ENST00000590181 EMSYQ7Z589 1322 aa12□□□□□ -0.49
LIG3-212ENST00000590181 FAM86C2PA6NEL3 165 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 CDKL5O76039 1030 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 RXRAP19793 462 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 SLC26A2P50443 739 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 SP2Q02086 613 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 TAP1Q03518 808 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 MTMR1Q13613 665 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 HSDL1Q3SXM5 330 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 HERC6Q8IVU3 1022 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 SEPT1Q8WYJ6 367 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 HLA-CQ95604 372 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 IL17RAQ96F46 866 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 C16orf70Q9BSU1 422 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 FAM217BQ9NTX9 383 aaPredicted RBP11.99□□□□□ -0.49
LIG3-212ENST00000590181 NFASCO94856 1347 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 NLRC5Q86WI3 1866 aa11.99□□□□□ -0.49
LIG3-212ENST00000590181 MICAL3Q7RTP6 2002 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 NRCAMQ92823 1304 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 CPLX1O14810 134 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 CYP3A4P08684 503 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 IQCF3P0C7M6 154 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 SELPP16109 830 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 PDIA3P30101 505 aaKnown RBP11.98□□□□□ -0.49
LIG3-212ENST00000590181 CDC27P30260 824 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 HOXC8P31273 242 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 SREBF1P36956 1147 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 CLK2P49760 499 aaKnown RBP11.98□□□□□ -0.49
LIG3-212ENST00000590181 APOBRQ0VD83 1088 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 GRB10Q13322 594 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 CEP55Q53EZ4 464 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 WWC2Q6AWC2 1192 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 CYFIP1Q7L576 1253 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 SPRED2Q7Z698 418 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 SKAP1Q86WV1 359 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 CMTR1Q8N1G2 835 aaKnown RBP11.98□□□□□ -0.49
LIG3-212ENST00000590181 IL31RAQ8NI17 732 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 GDPD5Q8WTR4 605 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 PPP1R13LQ8WUF5 828 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 GPR20Q99678 358 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 MXRA8Q9BRK3 442 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 SDF4Q9BRK5 362 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 FTOQ9C0B1 505 aaKnown RBP eCLIP11.98□□□□□ -0.49
LIG3-212ENST00000590181 SMARCAD1Q9H4L7 1026 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 NAP1L2Q9ULW6 460 aaPredicted RBP11.98□□□□□ -0.49
LIG3-212ENST00000590181 ARIH1Q9Y4X5 557 aaPredicted RBP11.98□□□□□ -0.49
LIG3-212ENST00000590181 ATG2AQ2TAZ0 1938 aa11.98□□□□□ -0.49
LIG3-212ENST00000590181 KIF28PB7ZC32 967 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 STXBP3O00186 592 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 MEIS1O00470 390 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 TLL1O43897 1013 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 LGALS2P05162 132 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 XBP1P17861 261 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 ITGB5P18084 799 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 ADD1P35611 737 aaKnown RBP11.97□□□□□ -0.49
LIG3-212ENST00000590181 KCNJ6P48051 423 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 USP11P51784 963 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 SETQ01105 290 aaPredicted RBP11.97□□□□□ -0.49
LIG3-212ENST00000590181 RPAINQ86UA6 219 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 SERINC5Q86VE9 423 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 REXO1Q8N1G1 1221 aaKnown RBP11.97□□□□□ -0.49
LIG3-212ENST00000590181 KHSRPQ92945 711 aaKnown RBP eCLIP11.97□□□□□ -0.49
LIG3-212ENST00000590181 C11orf16Q9NQ32 467 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 TBC1D22BQ9NU19 505 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 ERAP1Q9NZ08 941 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 RTEL1Q9NZ71 1219 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 HDAC6Q9UBN7 1215 aa11.97□□□□□ -0.49
LIG3-212ENST00000590181 ABHD14A-ACY1A0A1B0GW23 586 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 C17orf102A2RUQ5 167 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 RRN3P2A6NIE6 340 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 DEXIO95424 95 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 KCNA2P16389 499 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 ZNF76P36508 570 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 SSRP1Q08945 709 aaKnown RBP11.96□□□□□ -0.49
LIG3-212ENST00000590181 NTRK3Q16288 839 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 GDF6Q6KF10 455 aaPredicted RBP11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms