RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 NUCB2P80303 420 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 PLS1Q14651 629 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 SAFBQ15424 915 aaKnown RBP eCLIP6.09□□□□□ -1.43
LIG3-210ENST00000588109 PKN1Q16512 942 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 SLC35G1Q2M3R5 365 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 QRICH1Q2TAL8 776 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 USH1GQ495M9 461 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 WWC2Q6AWC2 1192 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 MCTP1Q6DN14 999 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 CATSPERGQ6ZRH7 1159 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 FBXO11Q86XK2 927 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 CPXCR1Q8N123 301 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 ZNF713Q8N859 430 aaPredicted RBP6.09□□□□□ -1.43
LIG3-210ENST00000588109 CCDC148Q8NFR7 591 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 SMCR8Q8TEV9 937 aaPredicted RBP6.09□□□□□ -1.43
LIG3-210ENST00000588109 FOXD4L4Q8WXT5 416 aaPredicted RBP6.09□□□□□ -1.43
LIG3-210ENST00000588109 BRI3BPQ8WY22 251 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 CLP1Q92989 425 aaKnown RBP6.09□□□□□ -1.43
LIG3-210ENST00000588109 ATG4CQ96DT6 458 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 AIFM3Q96NN9 605 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 AMNQ9BXJ7 453 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 RANBP17Q9H2T7 1088 aaKnown RBP6.09□□□□□ -1.43
LIG3-210ENST00000588109 BRMS1Q9HCU9 246 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 HOXC10Q9NYD6 342 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 CHMP5Q9NZZ3 219 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 VPS54Q9P1Q0 977 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 CCPG1Q9ULG6 757 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 PPP1R9AQ9ULJ8 1098 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 PCDHA1Q9Y5I3 950 aa6.09□□□□□ -1.43
LIG3-210ENST00000588109 MYPNQ86TC9 1320 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 BTBD19C9JJ37 291 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 STXBP3O00186 592 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 PDHXO00330 501 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 VWA5AO00534 786 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 MAPTP10636 758 aaKnown RBP6.08□□□□□ -1.44
LIG3-210ENST00000588109 CALML3P27482 149 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 HOXA7P31268 230 aaPredicted RBP6.08□□□□□ -1.44
LIG3-210ENST00000588109 SREBF2Q12772 1141 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 GAS6Q14393 721 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 DEFB115Q30KQ5 88 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 SAMD5Q5TGI4 173 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 KRT40Q6A162 431 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 OTUD7BQ6GQQ9 843 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 CYP4F22Q6NT55 531 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 ANKRD23Q86SG2 305 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 FBXO18Q8NFZ0 1043 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 COA7Q96BR5 231 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 MTMR8Q96EF0 704 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 HHIPL1Q96JK4 782 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 SUSD3Q96L08 255 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 PARK7Q99497 189 aaKnown RBP6.08□□□□□ -1.44
LIG3-210ENST00000588109 PAGR1Q9BTK6 254 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 ASCC2Q9H1I8 757 aaPredicted RBP6.08□□□□□ -1.44
LIG3-210ENST00000588109 SLC38A10Q9HBR0 1119 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 RAVER2Q9HCJ3 691 aaKnown RBP6.08□□□□□ -1.44
LIG3-210ENST00000588109 C6orf50Q9HD87 102 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 SH3GLB2Q9NR46 395 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 GJB4Q9NTQ9 266 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 BARHL2Q9NY43 387 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 MARK1Q9P0L2 795 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 CXXC1Q9P0U4 656 aaPredicted RBP6.08□□□□□ -1.44
LIG3-210ENST00000588109 PNMA2Q9UL42 364 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 KCNJ14Q9UNX9 436 aa6.08□□□□□ -1.44
LIG3-210ENST00000588109 BAZ2BQ9UIF8 2168 aaKnown RBP6.07□□□□□ -1.44
LIG3-210ENST00000588109 ABCB11O95342 1321 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 SMCO2A6NFE2 343 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 RASSF10A6NK89 507 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 FAM155AB1AL88 458 aaPredicted RBP6.07□□□□□ -1.44
LIG3-210ENST00000588109 PPP1R11O60927 126 aaPredicted RBP6.07□□□□□ -1.44
LIG3-210ENST00000588109 F13A1P00488 732 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 MMP1P03956 469 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 ICAM1P05362 532 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 FAM157BP0CG42 384 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 ZSCAN22P10073 491 aaPredicted RBP6.07□□□□□ -1.44
LIG3-210ENST00000588109 CYP2C8P10632 490 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 ALAS1P13196 640 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 GNA11P29992 359 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 DDIT3P35638 169 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 KRT2P35908 639 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 ADCY7P51828 1080 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 MRPL12P52815 198 aaKnown RBP6.07□□□□□ -1.44
LIG3-210ENST00000588109 INHBEP58166 350 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 HERVK_113P62684 666 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 KRT76Q01546 638 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 KIF23Q02241 960 aaPredicted RBP6.07□□□□□ -1.44
LIG3-210ENST00000588109 TNP2Q05952 138 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 NOGQ13253 232 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 MOGSQ13724 837 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 LAMC2Q13753 1193 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 PKP1Q13835 747 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 C11orf91Q3C1V1 193 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 SNRNP48Q6IEG0 339 aaKnown RBP6.07□□□□□ -1.44
LIG3-210ENST00000588109 GPAT2Q6NUI2 795 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 FERMT3Q86UX7 667 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 CCAR1Q8IX12 1150 aaKnown RBP6.07□□□□□ -1.44
LIG3-210ENST00000588109 DIS3L2Q8IYB7 885 aaKnown RBP6.07□□□□□ -1.44
LIG3-210ENST00000588109 FAM177A1Q8N128 213 aaPredicted RBP6.07□□□□□ -1.44
LIG3-210ENST00000588109 MB21D1Q8N884 522 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 BICD2Q8TD16 824 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 GTF3C2Q8WUA4 911 aaPredicted RBP6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms