RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 GIT2Q14161 759 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 PTPN14Q15678 1187 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 C9orf131Q5VYM1 1079 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 PPP4R3CPQ6ZMV5 832 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 USP50Q70EL3 339 aaPredicted RBP15.75■□□□□ 0.11
LIG3-205ENST00000585941 MB21D1Q8N884 522 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 ZC3H15Q8WU90 426 aaKnown RBP15.75■□□□□ 0.11
LIG3-205ENST00000585941 L3MBTL3Q96JM7 780 aaPredicted RBP15.75■□□□□ 0.11
LIG3-205ENST00000585941 TEX13BQ9BXU2 312 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 KCNH7Q9NS40 1196 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 TBC1D22BQ9NU19 505 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 PAPPA2Q9BXP8 1791 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 MFAP3LO75121 409 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 NF2P35240 595 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 PSMC6P62333 389 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 RBL2Q08999 1139 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 PGM5Q15124 567 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 E4F1Q66K89 784 aaPredicted RBP15.74■□□□□ 0.11
LIG3-205ENST00000585941 SNRNP48Q6IEG0 339 aaKnown RBP15.74■□□□□ 0.11
LIG3-205ENST00000585941 TMEM139Q8IV31 216 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 RETREG2Q8NC44 543 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 ZNF507Q8TCN5 953 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 DYDC2Q96IM9 177 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 CEP63Q96MT8 703 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 RMDN3Q96TC7 470 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 NUP58Q9BVL2 599 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 BHMT2Q9H2M3 363 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 UNC45AQ9H3U1 944 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 PXMP2Q9NR77 195 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 ZNF214Q9UL59 606 aaPredicted RBP15.74■□□□□ 0.11
LIG3-205ENST00000585941 PCDHA2Q9Y5H9 948 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 COL4A3BPQ9Y5P4 624 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 SNCAIPQ9Y6H5 919 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 ZC3H4Q9UPT8 1303 aaKnown RBP15.74■□□□□ 0.11
LIG3-205ENST00000585941 PTPRFP10586 1907 aa15.74■□□□□ 0.11
LIG3-205ENST00000585941 GOLGA6L9A6NEM1 432 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 TBCAO75347 108 aaKnown RBP15.73■□□□□ 0.11
LIG3-205ENST00000585941 GNA14O95837 355 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 TNNT1P13805 278 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 PRKCSHP14314 528 aaPredicted RBP15.73■□□□□ 0.11
LIG3-205ENST00000585941 ADKP55263 362 aaKnown RBP15.73■□□□□ 0.11
LIG3-205ENST00000585941 FKBP3Q00688 224 aaKnown RBP15.73■□□□□ 0.11
LIG3-205ENST00000585941 MTMR1Q13613 665 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 VGLL4Q14135 290 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 ARHGEF16Q5VV41 709 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 NSMFQ6X4W1 530 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.73■□□□□ 0.11
LIG3-205ENST00000585941 NYAP1Q6ZVC0 841 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 TPH2Q8IWU9 490 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 C16orf45Q96MC5 204 aaPredicted RBP15.73■□□□□ 0.11
LIG3-205ENST00000585941 TAAR1Q96RJ0 339 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 REEP2Q9BRK0 252 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 PDCD2LQ9BRP1 358 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 AGO4Q9HCK5 861 aaKnown RBP15.73■□□□□ 0.11
LIG3-205ENST00000585941 RGL1Q9NZL6 768 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 PAXBP1Q9Y5B6 917 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 MAFGO15525 162 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 CHMP2AO43633 222 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 GYPCP04921 128 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 YBX3P16989 372 aaKnown RBP eCLIP15.73■□□□□ 0.111e-6■■□□□ 11.7
LIG3-205ENST00000585941 FECHP22830 423 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 CCND2P30279 289 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 MRPS9P82933 396 aaKnown RBP15.73■□□□□ 0.11
LIG3-205ENST00000585941 CTTNQ14247 550 aaKnown RBP15.73■□□□□ 0.11
LIG3-205ENST00000585941 PTPN21Q16825 1174 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 ZCWPW2Q504Y3 356 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 FKBP15Q5T1M5 1219 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 SLC30A10Q6XR72 485 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 MIER3Q7Z3K6 550 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 NOC4LQ9BVI4 516 aaKnown RBP15.73■□□□□ 0.11
LIG3-205ENST00000585941 ACAD9Q9H845 621 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 TCEAL9Q9UHQ7 104 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 FZD1Q9UP38 647 aa15.73■□□□□ 0.11
LIG3-205ENST00000585941 OTOFQ9HC10 1997 aa15.72■□□□□ 0.11
LIG3-205ENST00000585941 PES1O00541 588 aaKnown RBP15.72■□□□□ 0.11
LIG3-205ENST00000585941 STAM2O75886 525 aa15.72■□□□□ 0.11
LIG3-205ENST00000585941 P4HBP07237 508 aaKnown RBP15.72■□□□□ 0.11
LIG3-205ENST00000585941 EIF2AK2P19525 551 aaKnown RBP15.72■□□□□ 0.11
LIG3-205ENST00000585941 CASP14P31944 242 aa15.72■□□□□ 0.11
LIG3-205ENST00000585941 TBC1D8BQ0IIM8 1120 aa15.72■□□□□ 0.11
LIG3-205ENST00000585941 MAN2A1Q16706 1144 aa15.72■□□□□ 0.11
LIG3-205ENST00000585941 EDRF1Q3B7T1 1238 aa15.72■□□□□ 0.11
LIG3-205ENST00000585941 IL31RAQ8NI17 732 aa15.72■□□□□ 0.11
LIG3-205ENST00000585941 NSUN6Q8TEA1 469 aaKnown RBP15.72■□□□□ 0.11
LIG3-205ENST00000585941 PPP1R13BQ96KQ4 1090 aa15.72■□□□□ 0.11
LIG3-205ENST00000585941 OLFML3Q9NRN5 406 aa15.72■□□□□ 0.11
LIG3-205ENST00000585941 SEL1LQ9UBV2 794 aa15.72■□□□□ 0.11
LIG3-205ENST00000585941 LOC285556D6RIA3 1793 aa15.71■□□□□ 0.11
LIG3-205ENST00000585941 NPHP3-ACAD11A0A0J9YXS1 232 aa15.71■□□□□ 0.11
LIG3-205ENST00000585941 SPDYE16A6NNV3 312 aaPredicted RBP15.71■□□□□ 0.11
LIG3-205ENST00000585941 USP27XA6NNY8 438 aa15.71■□□□□ 0.11
LIG3-205ENST00000585941 DHX15O43143 795 aaKnown RBP15.71■□□□□ 0.11
LIG3-205ENST00000585941 PPATQ06203 517 aa15.71■□□□□ 0.11
LIG3-205ENST00000585941 PRKG1Q13976 671 aa15.71■□□□□ 0.11
LIG3-205ENST00000585941 BAATQ14032 418 aaPredicted RBP15.71■□□□□ 0.11
LIG3-205ENST00000585941 TMEM132BQ14DG7 1078 aa15.71■□□□□ 0.11
LIG3-205ENST00000585941 LRRC41Q15345 812 aa15.71■□□□□ 0.11
LIG3-205ENST00000585941 CEP135Q66GS9 1140 aa15.71■□□□□ 0.11
LIG3-205ENST00000585941 RINT1Q6NUQ1 792 aa15.71■□□□□ 0.11
LIG3-205ENST00000585941 LRRC55Q6ZSA7 311 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms