RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 SERINC5Q86VE9 423 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 SDF4Q9BRK5 362 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 RNPEPQ9H4A4 650 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 AGO4Q9HCK5 861 aaKnown RBP16.91■□□□□ 0.3
SS18-212ENST00000579061 TPCN1Q9ULQ1 816 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 TELO2Q9Y4R8 837 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 ADAMTS3O15072 1205 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 SEC24BO95487 1268 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 CKBP12277 381 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 CIITAP33076 1130 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 NLRP5P59047 1200 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 SETQ01105 290 aaPredicted RBP16.9■□□□□ 0.3
SS18-212ENST00000579061 HIC1Q14526 733 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 Q7L0L9 218 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 PLA2G4DQ86XP0 818 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 TRIM50Q86XT4 487 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 ATP6V0A1Q93050 837 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 C22orf23Q9BZE7 217 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 SMARCAD1Q9H4L7 1026 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 MTMR10Q9NXD2 777 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 PKD2L1Q9P0L9 805 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 EMSYQ7Z589 1322 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 STK36Q9NRP7 1315 aa16.9■□□□□ 0.3
SS18-212ENST00000579061 IGLV3-22A0A075B6J6 115 aa16.89■□□□□ 0.29
SS18-212ENST00000579061 FAM86B1E9PN63 330 aa16.89■□□□□ 0.29
SS18-212ENST00000579061 LGR5O75473 907 aa16.89■□□□□ 0.29
SS18-212ENST00000579061 FAM86B2P0C5J1 330 aa16.89■□□□□ 0.29
SS18-212ENST00000579061 ACTN1P12814 892 aa16.89■□□□□ 0.29
SS18-212ENST00000579061 ADAM17P78536 824 aa16.89■□□□□ 0.29
SS18-212ENST00000579061 ZNF200P98182 395 aaPredicted RBP16.89■□□□□ 0.29
SS18-212ENST00000579061 LRRC8DQ7L1W4 858 aa16.89■□□□□ 0.29
SS18-212ENST00000579061 OTOP2Q7RTS6 562 aa16.89■□□□□ 0.29
SS18-212ENST00000579061 DEFB128Q7Z7B8 93 aa16.89■□□□□ 0.29
SS18-212ENST00000579061 DAGLBQ8NCG7 672 aa16.89■□□□□ 0.29
SS18-212ENST00000579061 ERAP1Q9NZ08 941 aa16.89■□□□□ 0.29
SS18-212ENST00000579061 CXXC1Q9P0U4 656 aaPredicted RBP16.89■□□□□ 0.29
SS18-212ENST00000579061 PCDHA4Q9UN74 947 aa16.89■□□□□ 0.29
SS18-212ENST00000579061 NRCAMQ92823 1304 aa16.89■□□□□ 0.29
SS18-212ENST00000579061 CAND2O75155 1236 aa16.88■□□□□ 0.29
SS18-212ENST00000579061 ATG7O95352 703 aa16.88■□□□□ 0.29
SS18-212ENST00000579061 USP11P51784 963 aa16.88■□□□□ 0.29
SS18-212ENST00000579061 ITGB3BPQ13352 177 aaPredicted RBP16.88■□□□□ 0.29
SS18-212ENST00000579061 RASGRP4Q8TDF6 673 aa16.88■□□□□ 0.29
SS18-212ENST00000579061 TNPO1Q92973 898 aaKnown RBP16.88■□□□□ 0.29
SS18-212ENST00000579061 SLC4A7Q9Y6M7 1214 aa16.88■□□□□ 0.29
SS18-212ENST00000579061 GBF1Q92538 1859 aa16.88■□□□□ 0.29
SS18-212ENST00000579061 MYH9P35579 1960 aaKnown RBP16.88■□□□□ 0.29
SS18-212ENST00000579061 TREHO43280 583 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 CXCL10P02778 98 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 XBP1P17861 261 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 DNAJB2P25686 324 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 NEK4P51957 841 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 ACTR2P61160 394 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 C8orf34Q49A92 452 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 ZNF618Q5T7W0 954 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 TRAF7Q6Q0C0 670 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 PLPPR4Q7Z2D5 763 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 BLIDQ8IZY5 108 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 GLG1Q92896 1179 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 WNT8BQ93098 351 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 PCYT2Q99447 389 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 FTOQ9C0B1 505 aaKnown RBP eCLIP16.87■□□□□ 0.29
SS18-212ENST00000579061 SEMA6BQ9H3T3 888 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 AZI2Q9H6S1 392 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 TBC1D22BQ9NU19 505 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 SETD4Q9NVD3 440 aa16.87■□□□□ 0.29
SS18-212ENST00000579061 WDR81Q562E7 1941 aa16.86■□□□□ 0.29
SS18-212ENST00000579061 M0R2N6 131 aa16.86■□□□□ 0.29
SS18-212ENST00000579061 IPO5O00410 1097 aaKnown RBP16.86■□□□□ 0.29
SS18-212ENST00000579061 DHX15O43143 795 aaKnown RBP16.86■□□□□ 0.29
SS18-212ENST00000579061 BAIAP3O94812 1187 aa16.86■□□□□ 0.29
SS18-212ENST00000579061 GPNMBQ14956 572 aa16.86■□□□□ 0.29
SS18-212ENST00000579061 RAB30Q15771 203 aa16.86■□□□□ 0.29
SS18-212ENST00000579061 ME3Q16798 604 aa16.86■□□□□ 0.29
SS18-212ENST00000579061 LMBR1Q8WVP7 490 aa16.86■□□□□ 0.29
SS18-212ENST00000579061 PBX4Q9BYU1 374 aa16.86■□□□□ 0.29
SS18-212ENST00000579061 STXBP5LQ9Y2K9 1186 aa16.86■□□□□ 0.29
SS18-212ENST00000579061 MYO9BQ13459 2157 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 IGKV6D-21A0A0A0MT36 114 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 ZBBXA8MT70 800 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 NBNO60934 754 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 CTDNEP1O95476 244 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 THPOP40225 353 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 SLC26A2P50443 739 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 STAT5BP51692 787 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 PPFIA1Q13136 1202 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 NPY5RQ15761 445 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 CNKSR3Q6P9H4 555 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 ABHD15Q6UXT9 468 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 RPAINQ86UA6 219 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 PHOSPHO2Q8TCD6 241 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 WASF1Q92558 559 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 GTF3C6Q969F1 213 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 AIFM3Q96NN9 605 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 ZNF577Q9BSK1 485 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 MSRAQ9UJ68 235 aa16.85■□□□□ 0.29
SS18-212ENST00000579061 MBLAC1A4D2B0 266 aaPredicted RBP16.84■□□□□ 0.29
SS18-212ENST00000579061 RRN3P2A6NIE6 340 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 GRXCR1A8MXD5 290 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 RSPH10B2B2RC85 870 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms