RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 TNFRSF1AP19438 455 aa7.55□□□□□ -1.2
SMCHD1-202ENST00000577300 RBM25P49756 843 aaKnown RBP7.55□□□□□ -1.2
SMCHD1-202ENST00000577300 YOD1Q5VVQ6 348 aaPredicted RBP7.55□□□□□ -1.2
SMCHD1-202ENST00000577300 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.55□□□□□ -1.2
SMCHD1-202ENST00000577300 TMPRSS5Q9H3S3 457 aa7.55□□□□□ -1.2
SMCHD1-202ENST00000577300 TELO2Q9Y4R8 837 aa7.55□□□□□ -1.2
SMCHD1-202ENST00000577300 BLACEA4D250 179 aa7.54□□□□□ -1.2
SMCHD1-202ENST00000577300 NPEPPSL1A6NEC2 478 aa7.54□□□□□ -1.2
SMCHD1-202ENST00000577300 CKMP06732 381 aa7.54□□□□□ -1.2
SMCHD1-202ENST00000577300 ENO2P09104 434 aaPredicted RBP7.54□□□□□ -1.2
SMCHD1-202ENST00000577300 CD276Q5ZPR3 534 aa7.54□□□□□ -1.2
SMCHD1-202ENST00000577300 KCTD1Q719H9 257 aa7.54□□□□□ -1.2
SMCHD1-202ENST00000577300 NUDT10Q8NFP7 164 aa7.54□□□□□ -1.2
SMCHD1-202ENST00000577300 NUDT11Q96G61 164 aa7.54□□□□□ -1.2
SMCHD1-202ENST00000577300 SPATA9Q9BWV2 254 aa7.54□□□□□ -1.2
SMCHD1-202ENST00000577300 IPPKQ9H8X2 491 aa7.54□□□□□ -1.2
SMCHD1-202ENST00000577300 ST6GALNAC2Q9UJ37 374 aa7.54□□□□□ -1.2
SMCHD1-202ENST00000577300 ASXL2Q76L83 1435 aa7.53□□□□□ -1.2
SMCHD1-202ENST00000577300 MATN3O15232 486 aa7.53□□□□□ -1.2
SMCHD1-202ENST00000577300 GPR42O15529 346 aa7.53□□□□□ -1.2
SMCHD1-202ENST00000577300 STK10O94804 968 aaKnown RBP7.53□□□□□ -1.2
SMCHD1-202ENST00000577300 KNG1P01042 644 aa7.53□□□□□ -1.2
SMCHD1-202ENST00000577300 SKIDA1Q1XH10 827 aa7.53□□□□□ -1.2
SMCHD1-202ENST00000577300 SLFN13Q68D06 897 aa7.53□□□□□ -1.2
SMCHD1-202ENST00000577300 CIR1Q86X95 450 aaPredicted RBP7.53□□□□□ -1.2
SMCHD1-202ENST00000577300 CKAP2LQ8IYA6 745 aa7.53□□□□□ -1.2
SMCHD1-202ENST00000577300 DNERQ8NFT8 737 aa7.53□□□□□ -1.2
SMCHD1-202ENST00000577300 ALG1Q9BT22 464 aa7.53□□□□□ -1.2
SMCHD1-202ENST00000577300 KCND1Q9NSA2 647 aa7.53□□□□□ -1.2
SMCHD1-202ENST00000577300 ZDHHC9Q9Y397 364 aa7.53□□□□□ -1.2
SMCHD1-202ENST00000577300 B4GALT4O60513 344 aa7.52□□□□□ -1.21
SMCHD1-202ENST00000577300 FBXO21O94952 628 aa7.52□□□□□ -1.21
SMCHD1-202ENST00000577300 ICAM4Q14773 271 aa7.52□□□□□ -1.21
SMCHD1-202ENST00000577300 PHF19Q5T6S3 580 aa7.52□□□□□ -1.21
SMCHD1-202ENST00000577300 Q6ZUG5 572 aa7.52□□□□□ -1.21
SMCHD1-202ENST00000577300 AJUBAQ96IF1 538 aa7.52□□□□□ -1.21
SMCHD1-202ENST00000577300 CD248Q9HCU0 757 aa7.52□□□□□ -1.21
SMCHD1-202ENST00000577300 ARHGAP20Q9P2F6 1191 aa7.52□□□□□ -1.21
SMCHD1-202ENST00000577300 ZFP69BQ9UJL9 534 aa7.52□□□□□ -1.21
SMCHD1-202ENST00000577300 ZNF839A8K0R7 811 aa7.51□□□□□ -1.21
SMCHD1-202ENST00000577300 WNT9AO14904 365 aa7.51□□□□□ -1.21
SMCHD1-202ENST00000577300 U2SURPO15042 1029 aaKnown RBP7.51□□□□□ -1.21
SMCHD1-202ENST00000577300 PDPK1O15530 556 aa7.51□□□□□ -1.21
SMCHD1-202ENST00000577300 ADCY3O60266 1144 aa7.51□□□□□ -1.21
SMCHD1-202ENST00000577300 ZC3H6P61129 1189 aaKnown RBP7.51□□□□□ -1.21
SMCHD1-202ENST00000577300 PFKPQ01813 784 aa7.51□□□□□ -1.21
SMCHD1-202ENST00000577300 RASGRF1Q13972 1273 aa7.51□□□□□ -1.21
SMCHD1-202ENST00000577300 SPATC1Q76KD6 591 aa7.51□□□□□ -1.21
SMCHD1-202ENST00000577300 MAMDC2Q7Z304 686 aaPredicted RBP7.51□□□□□ -1.21
SMCHD1-202ENST00000577300 SCUBE1Q8IWY4 988 aa7.51□□□□□ -1.21
SMCHD1-202ENST00000577300 JADE2Q9NQC1 790 aa7.51□□□□□ -1.21
SMCHD1-202ENST00000577300 TSC22D4Q9Y3Q8 395 aa7.51□□□□□ -1.21
SMCHD1-202ENST00000577300 ACOT7O00154 380 aa7.5□□□□□ -1.21
SMCHD1-202ENST00000577300 AQP7O14520 342 aa7.5□□□□□ -1.21
SMCHD1-202ENST00000577300 NBPF6Q5VWK0 638 aa7.5□□□□□ -1.21
SMCHD1-202ENST00000577300 RALYLQ86SE5 291 aaKnown RBP7.5□□□□□ -1.21
SMCHD1-202ENST00000577300 REXO1L1PQ8IX06 675 aa7.5□□□□□ -1.21
SMCHD1-202ENST00000577300 SH3RF2Q8TEC5 729 aa7.5□□□□□ -1.21
SMCHD1-202ENST00000577300 KISS1RQ969F8 398 aaPredicted RBP7.5□□□□□ -1.21
SMCHD1-202ENST00000577300 NBPF4Q96M43 638 aa7.5□□□□□ -1.21
SMCHD1-202ENST00000577300 CCDC113Q9H0I3 377 aa7.5□□□□□ -1.21
SMCHD1-202ENST00000577300 MEGF9Q9H1U4 602 aa7.5□□□□□ -1.21
SMCHD1-202ENST00000577300 TRAF6Q9Y4K3 522 aa7.5□□□□□ -1.21
SMCHD1-202ENST00000577300 TCRBV5S4A2TA0A5A2 114 aa7.49□□□□□ -1.21
SMCHD1-202ENST00000577300 GLRBP48167 497 aa7.49□□□□□ -1.21
SMCHD1-202ENST00000577300 ZXDAP98168 799 aa7.49□□□□□ -1.21
SMCHD1-202ENST00000577300 PAK1Q13153 545 aa7.49□□□□□ -1.21
SMCHD1-202ENST00000577300 CDSNQ15517 529 aa7.49□□□□□ -1.21
SMCHD1-202ENST00000577300 STPG3Q8N7X2 389 aa7.49□□□□□ -1.21
SMCHD1-202ENST00000577300 PTPRN2Q92932 1015 aa7.49□□□□□ -1.21
SMCHD1-202ENST00000577300 CDK5RAP1Q96SZ6 601 aaKnown RBP7.49□□□□□ -1.21
SMCHD1-202ENST00000577300 KATNBL1Q9H079 304 aa7.49□□□□□ -1.21
SMCHD1-202ENST00000577300 KLC2Q9H0B6 622 aa7.49□□□□□ -1.21
SMCHD1-202ENST00000577300 SEC61A2Q9H9S3 476 aa7.49□□□□□ -1.21
SMCHD1-202ENST00000577300 TRBV23-1A0A0A0MS06 115 aa7.48□□□□□ -1.21
SMCHD1-202ENST00000577300 PATE3B3GLJ2 98 aa7.48□□□□□ -1.21
SMCHD1-202ENST00000577300 CNOT4O95628 575 aaKnown RBP7.48□□□□□ -1.21
SMCHD1-202ENST00000577300 IL18BPO95998 194 aa7.48□□□□□ -1.21
SMCHD1-202ENST00000577300 CSF2RBP32927 897 aa7.48□□□□□ -1.21
SMCHD1-202ENST00000577300 SUMO1P63165 101 aaKnown RBP7.48□□□□□ -1.21
SMCHD1-202ENST00000577300 MTERF2Q49AM1 385 aa7.48□□□□□ -1.21
SMCHD1-202ENST00000577300 NAALADL2Q58DX5 795 aa7.48□□□□□ -1.21
SMCHD1-202ENST00000577300 NLGN4XQ8N0W4 816 aa7.48□□□□□ -1.21
SMCHD1-202ENST00000577300 ZBTB38Q8NAP3 1195 aaPredicted RBP7.48□□□□□ -1.21
SMCHD1-202ENST00000577300 PTPN18Q99952 460 aa7.48□□□□□ -1.21
SMCHD1-202ENST00000577300 CD244Q9BZW8 370 aa7.48□□□□□ -1.21
SMCHD1-202ENST00000577300 SLC4A7Q9Y6M7 1214 aa7.48□□□□□ -1.21
SMCHD1-202ENST00000577300 E9PSI1 815 aa7.47□□□□□ -1.21
SMCHD1-202ENST00000577300 H0Y858 1186 aa7.47□□□□□ -1.21
SMCHD1-202ENST00000577300 DBPQ10586 325 aaPredicted RBP7.47□□□□□ -1.21
SMCHD1-202ENST00000577300 GPR19Q15760 415 aa7.47□□□□□ -1.21
SMCHD1-202ENST00000577300 MTDHQ86UE4 582 aaKnown RBP7.47□□□□□ -1.21
SMCHD1-202ENST00000577300 CDC6Q99741 560 aa7.47□□□□□ -1.21
SMCHD1-202ENST00000577300 SRPK3Q9UPE1 567 aa7.47□□□□□ -1.21
SMCHD1-202ENST00000577300 C6orf222P0C671 652 aaPredicted RBP7.46□□□□□ -1.22
SMCHD1-202ENST00000577300 NAT1P18440 290 aa7.46□□□□□ -1.22
SMCHD1-202ENST00000577300 SSRP1Q08945 709 aaKnown RBP7.46□□□□□ -1.22
SMCHD1-202ENST00000577300 BTBD8Q5XKL5 378 aa7.46□□□□□ -1.22
SMCHD1-202ENST00000577300 FBXW5Q969U6 566 aa7.46□□□□□ -1.22
SMCHD1-202ENST00000577300 IPO9Q96P70 1041 aaKnown RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms