RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 NGRNQ9NPE2 291 aaKnown RBP7.77□□□□□ -1.17
NUP88-213ENST00000576862 NUB1Q9Y5A7 615 aa7.77□□□□□ -1.17
NUP88-213ENST00000576862 FFAR3O14843 346 aa7.76□□□□□ -1.17
NUP88-213ENST00000576862 OPA1O60313 960 aa7.76□□□□□ -1.17
NUP88-213ENST00000576862 GLRX3O76003 335 aaKnown RBP7.76□□□□□ -1.17
NUP88-213ENST00000576862 NPTXRO95502 500 aa7.76□□□□□ -1.17
NUP88-213ENST00000576862 VMACQ2NL98 169 aa7.76□□□□□ -1.17
NUP88-213ENST00000576862 TMEM177Q53S58 311 aa7.76□□□□□ -1.17
NUP88-213ENST00000576862 PLEKHG4Q58EX7 1191 aa7.76□□□□□ -1.17
NUP88-213ENST00000576862 DALRD3Q5D0E6 543 aaKnown RBP7.76□□□□□ -1.17
NUP88-213ENST00000576862 FIGNQ5HY92 759 aa7.76□□□□□ -1.17
NUP88-213ENST00000576862 HHIPL2Q6UWX4 724 aa7.76□□□□□ -1.17
NUP88-213ENST00000576862 SAPCD2Q86UD0 394 aa7.76□□□□□ -1.17
NUP88-213ENST00000576862 NLGN4XQ8N0W4 816 aa7.76□□□□□ -1.17
NUP88-213ENST00000576862 TP53I13Q8NBR0 393 aaPredicted RBP7.76□□□□□ -1.17
NUP88-213ENST00000576862 INTS7Q9NVH2 962 aaKnown RBP7.76□□□□□ -1.17
NUP88-213ENST00000576862 SPATA6Q9NWH7 488 aaPredicted RBP7.76□□□□□ -1.17
NUP88-213ENST00000576862 TMA7Q9Y2S6 64 aaKnown RBP7.76□□□□□ -1.17
NUP88-213ENST00000576862 APPP05067 770 aa7.75□□□□□ -1.17
NUP88-213ENST00000576862 PTPN1P18031 435 aaKnown RBP7.75□□□□□ -1.17
NUP88-213ENST00000576862 MECP2P51608 486 aaKnown RBP7.75□□□□□ -1.17
NUP88-213ENST00000576862 ADAM9Q13443 819 aa7.75□□□□□ -1.17
NUP88-213ENST00000576862 SMAD4Q13485 552 aaKnown RBP7.75□□□□□ -1.17
NUP88-213ENST00000576862 SEC23AQ15436 765 aa7.75□□□□□ -1.17
NUP88-213ENST00000576862 TCERG1LQ5VWI1 586 aa7.75□□□□□ -1.17
NUP88-213ENST00000576862 SDE2Q6IQ49 451 aa7.75□□□□□ -1.17
NUP88-213ENST00000576862 LIPIQ6XZB0 460 aa7.75□□□□□ -1.17
NUP88-213ENST00000576862 NOSTRINQ8IVI9 506 aa7.75□□□□□ -1.17
NUP88-213ENST00000576862 ZSCAN18Q8TBC5 510 aaPredicted RBP7.75□□□□□ -1.17
NUP88-213ENST00000576862 ZNF526Q8TF50 670 aaPredicted RBP7.75□□□□□ -1.17
NUP88-213ENST00000576862 ZBTB8AQ96BR9 441 aa7.75□□□□□ -1.17
NUP88-213ENST00000576862 PCDH18Q9HCL0 1135 aa7.75□□□□□ -1.17
NUP88-213ENST00000576862 SAMD15Q9P1V8 674 aa7.75□□□□□ -1.17
NUP88-213ENST00000576862 MAGEC2Q9UBF1 373 aaPredicted RBP7.75□□□□□ -1.17
NUP88-213ENST00000576862 ATP23Q9Y6H3 246 aa7.75□□□□□ -1.17
NUP88-213ENST00000576862 B4E1Z4 1266 aa7.74□□□□□ -1.17
NUP88-213ENST00000576862 M0R2C6 588 aa7.74□□□□□ -1.17
NUP88-213ENST00000576862 ZSCAN22P10073 491 aaPredicted RBP7.74□□□□□ -1.17
NUP88-213ENST00000576862 THBS2P35442 1172 aa7.74□□□□□ -1.17
NUP88-213ENST00000576862 TM4SF20Q53R12 229 aa7.74□□□□□ -1.17
NUP88-213ENST00000576862 BTBD8Q5XKL5 378 aa7.74□□□□□ -1.17
NUP88-213ENST00000576862 DDX53Q86TM3 631 aaKnown RBP7.74□□□□□ -1.17
NUP88-213ENST00000576862 TMEM151BQ8IW70 566 aa7.74□□□□□ -1.17
NUP88-213ENST00000576862 DHX37Q8IY37 1157 aaKnown RBP7.74□□□□□ -1.17
NUP88-213ENST00000576862 NIM1KQ8IY84 436 aa7.74□□□□□ -1.17
NUP88-213ENST00000576862 ADGRG2Q8IZP9 1017 aa7.74□□□□□ -1.17
NUP88-213ENST00000576862 KYQ8NBH2 561 aa7.74□□□□□ -1.17
NUP88-213ENST00000576862 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.73□□□□□ -1.17
NUP88-213ENST00000576862 SH3D21A4FU49 640 aa7.73□□□□□ -1.17
NUP88-213ENST00000576862 TRAF5O00463 557 aa7.73□□□□□ -1.17
NUP88-213ENST00000576862 CLASP2O75122 1294 aaKnown RBP7.73□□□□□ -1.17
NUP88-213ENST00000576862 JMJD7P0C870 316 aa7.73□□□□□ -1.17
NUP88-213ENST00000576862 RTP5Q14D33 572 aa7.73□□□□□ -1.17
NUP88-213ENST00000576862 CPZQ66K79 652 aa7.73□□□□□ -1.17
NUP88-213ENST00000576862 TMC5Q6UXY8 1006 aa7.73□□□□□ -1.17
NUP88-213ENST00000576862 LINC01356Q8N9X3 169 aa7.73□□□□□ -1.17
NUP88-213ENST00000576862 A0A1B0GTL3 188 aa7.72□□□□□ -1.17
NUP88-213ENST00000576862 C4BPAP04003 597 aaKnown RBP7.72□□□□□ -1.17
NUP88-213ENST00000576862 ZBTB48P10074 688 aaPredicted RBP7.72□□□□□ -1.17
NUP88-213ENST00000576862 PRR31Q5SQ13 230 aa7.72□□□□□ -1.17
NUP88-213ENST00000576862 PIK3R6Q5UE93 754 aa7.72□□□□□ -1.17
NUP88-213ENST00000576862 CD276Q5ZPR3 534 aa7.72□□□□□ -1.17
NUP88-213ENST00000576862 CDCA2Q69YH5 1023 aaPredicted RBP7.72□□□□□ -1.17
NUP88-213ENST00000576862 OTOP1Q7RTM1 612 aa7.72□□□□□ -1.17
NUP88-213ENST00000576862 LRRTM3Q86VH5 581 aa7.72□□□□□ -1.17
NUP88-213ENST00000576862 RIC8BQ9NVN3 520 aa7.72□□□□□ -1.17
NUP88-213ENST00000576862 PLAAQ9Y263 795 aa7.72□□□□□ -1.17
NUP88-213ENST00000576862 POU3F2P20265 443 aaPredicted RBP7.71□□□□□ -1.18
NUP88-213ENST00000576862 HSD3B2P26439 372 aa7.71□□□□□ -1.18
NUP88-213ENST00000576862 GJA4P35212 333 aa7.71□□□□□ -1.18
NUP88-213ENST00000576862 KRTAP19-4Q3LI73 84 aa7.71□□□□□ -1.18
NUP88-213ENST00000576862 LCE3BQ5TA77 95 aa7.71□□□□□ -1.18
NUP88-213ENST00000576862 SIAH1Q8IUQ4 282 aa7.71□□□□□ -1.18
NUP88-213ENST00000576862 TTLL6Q8N841 843 aa7.71□□□□□ -1.18
NUP88-213ENST00000576862 C2orf69Q8N8R5 385 aa7.71□□□□□ -1.18
NUP88-213ENST00000576862 DTX3Q8N9I9 347 aa7.71□□□□□ -1.18
NUP88-213ENST00000576862 DDX1Q92499 740 aaKnown RBP7.71□□□□□ -1.18
NUP88-213ENST00000576862 ZSWIM3Q96MP5 696 aa7.71□□□□□ -1.18
NUP88-213ENST00000576862 MTFR1LQ9H019 292 aa7.71□□□□□ -1.18
NUP88-213ENST00000576862 SLC12A8A0AV02 714 aa7.7□□□□□ -1.18
NUP88-213ENST00000576862 CBX4O00257 560 aa7.7□□□□□ -1.18
NUP88-213ENST00000576862 SCDO00767 359 aa7.7□□□□□ -1.18
NUP88-213ENST00000576862 GYS2P54840 703 aa7.7□□□□□ -1.18
NUP88-213ENST00000576862 DBPQ10586 325 aaPredicted RBP7.7□□□□□ -1.18
NUP88-213ENST00000576862 CFAP100Q494V2 611 aa7.7□□□□□ -1.18
NUP88-213ENST00000576862 EP400NLQ6ZTU2 488 aa7.7□□□□□ -1.18
NUP88-213ENST00000576862 CHST14Q8NCH0 376 aa7.7□□□□□ -1.18
NUP88-213ENST00000576862 DLG3Q92796 817 aa7.7□□□□□ -1.18
NUP88-213ENST00000576862 MFSD3Q96ES6 412 aa7.7□□□□□ -1.18
NUP88-213ENST00000576862 TMEM209Q96SK2 561 aa7.7□□□□□ -1.18
NUP88-213ENST00000576862 ORAI3Q9BRQ5 295 aa7.7□□□□□ -1.18
NUP88-213ENST00000576862 B3GALT1Q9Y5Z6 326 aa7.7□□□□□ -1.18
NUP88-213ENST00000576862 ZNF839A8K0R7 811 aa7.69□□□□□ -1.18
NUP88-213ENST00000576862 TRIM13O60858 407 aa7.69□□□□□ -1.18
NUP88-213ENST00000576862 FLT3P36888 993 aa7.69□□□□□ -1.18
NUP88-213ENST00000576862 PFKPQ01813 784 aa7.69□□□□□ -1.18
NUP88-213ENST00000576862 FZD5Q13467 585 aa7.69□□□□□ -1.18
NUP88-213ENST00000576862 PHF19Q5T6S3 580 aa7.69□□□□□ -1.18
NUP88-213ENST00000576862 VASNQ6EMK4 673 aa7.69□□□□□ -1.18
NUP88-213ENST00000576862 SPOCD1Q6ZMY3 1216 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms