RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 SLC30A4O14863 429 aa19.2■□□□□ 0.66
VPS53-218ENST00000575207 SPTLC1O15269 473 aa19.2■□□□□ 0.66
VPS53-218ENST00000575207 PPFIA4O75335 1185 aa19.2■□□□□ 0.66
VPS53-218ENST00000575207 LAMC2Q13753 1193 aa19.2■□□□□ 0.66
VPS53-218ENST00000575207 SEPT14Q6ZU15 432 aa19.2■□□□□ 0.66
VPS53-218ENST00000575207 KCTD1Q719H9 257 aa19.2■□□□□ 0.66
VPS53-218ENST00000575207 SSH3Q8TE77 659 aa19.2■□□□□ 0.66
VPS53-218ENST00000575207 SECISBP2LQ93073 1101 aaKnown RBP19.2■□□□□ 0.66
VPS53-218ENST00000575207 EHMT1Q9H9B1 1298 aa19.2■□□□□ 0.66
VPS53-218ENST00000575207 CYP26B1Q9NR63 512 aa19.2■□□□□ 0.66
VPS53-218ENST00000575207 NOP58Q9Y2X3 529 aaKnown RBP19.2■□□□□ 0.66
VPS53-218ENST00000575207 SLC4A4Q9Y6R1 1079 aa19.2■□□□□ 0.66
VPS53-218ENST00000575207 ADD2P35612 726 aa19.19■□□□□ 0.66
VPS53-218ENST00000575207 SLFNL1Q499Z3 407 aa19.19■□□□□ 0.66
VPS53-218ENST00000575207 WNT16Q9UBV4 365 aa19.19■□□□□ 0.66
VPS53-218ENST00000575207 MYH7BA7E2Y1 1941 aa19.18■□□□□ 0.66
VPS53-218ENST00000575207 LLGL2Q6P1M3 1020 aa19.18■□□□□ 0.66
VPS53-218ENST00000575207 ZNF444Q8N0Y2 327 aaPredicted RBP19.18■□□□□ 0.66
VPS53-218ENST00000575207 CASP10Q92851 521 aa19.18■□□□□ 0.66
VPS53-218ENST00000575207 USP18Q9UMW8 372 aa19.18■□□□□ 0.66
VPS53-218ENST00000575207 PLIN4Q96Q06 1357 aa19.18■□□□□ 0.66
VPS53-218ENST00000575207 SMG1Q96Q15 3661 aaKnown RBP19.17■□□□□ 0.66
VPS53-218ENST00000575207 KRBA1A5PL33 1030 aa19.17■□□□□ 0.66
VPS53-218ENST00000575207 GOLIM4O00461 696 aa19.17■□□□□ 0.66
VPS53-218ENST00000575207 STK25O00506 426 aa19.17■□□□□ 0.66
VPS53-218ENST00000575207 EOMESO95936 686 aa19.17■□□□□ 0.66
VPS53-218ENST00000575207 ZNF528Q3MIS6 628 aa19.17■□□□□ 0.66
VPS53-218ENST00000575207 MAML2Q8IZL2 1156 aaPredicted RBP19.17■□□□□ 0.66
VPS53-218ENST00000575207 STK11IPQ8N1F8 1099 aa19.17■□□□□ 0.66
VPS53-218ENST00000575207 NETO1Q8TDF5 533 aa19.17■□□□□ 0.66
VPS53-218ENST00000575207 C16orf70Q9BSU1 422 aa19.17■□□□□ 0.66
VPS53-218ENST00000575207 RNPEPQ9H4A4 650 aa19.17■□□□□ 0.66
VPS53-218ENST00000575207 PCDHB12Q9Y5F1 795 aa19.17■□□□□ 0.66
VPS53-218ENST00000575207 NAV2Q8IVL1 2488 aa19.16■□□□□ 0.66
VPS53-218ENST00000575207 CHRNA1P02708 482 aa19.16■□□□□ 0.66
VPS53-218ENST00000575207 GHRP10912 638 aa19.16■□□□□ 0.66
VPS53-218ENST00000575207 PAN2Q504Q3 1202 aaKnown RBP19.16■□□□□ 0.66
VPS53-218ENST00000575207 NEDD1Q8NHV4 660 aa19.16■□□□□ 0.66
VPS53-218ENST00000575207 ZMIZ1Q9ULJ6 1067 aa19.16■□□□□ 0.66
VPS53-218ENST00000575207 IGF2RP11717 2491 aa19.16■□□□□ 0.66
VPS53-218ENST00000575207 NBEAQ8NFP9 2946 aa19.16■□□□□ 0.66
VPS53-218ENST00000575207 FGF18O76093 207 aa19.15■□□□□ 0.66
VPS53-218ENST00000575207 SMIM10L2AP0DMW4 78 aa19.15■□□□□ 0.66
VPS53-218ENST00000575207 SMIM10L2BP0DMW5 78 aa19.15■□□□□ 0.66
VPS53-218ENST00000575207 KIAA1841Q6NSI8 718 aa19.15■□□□□ 0.66
VPS53-218ENST00000575207 NPAS4Q8IUM7 802 aa19.15■□□□□ 0.66
VPS53-218ENST00000575207 CHMP4CQ96CF2 233 aa19.15■□□□□ 0.66
VPS53-218ENST00000575207 ZNF287Q9HBT7 754 aa19.15■□□□□ 0.66
VPS53-218ENST00000575207 PARD6AQ9NPB6 346 aa19.15■□□□□ 0.66
VPS53-218ENST00000575207 HELZ2Q9BYK8 2649 aaKnown RBP19.15■□□□□ 0.66
VPS53-218ENST00000575207 DSPP15924 2871 aaKnown RBP19.14■□□□□ 0.65
VPS53-218ENST00000575207 LPIN1Q14693 890 aa19.14■□□□□ 0.65
VPS53-218ENST00000575207 SPECC1Q5M775 1068 aa19.14■□□□□ 0.65
VPS53-218ENST00000575207 LRSAM1Q6UWE0 723 aa19.14■□□□□ 0.65
VPS53-218ENST00000575207 RASGRP2Q7LDG7 609 aa19.14■□□□□ 0.65
VPS53-218ENST00000575207 LINC01599Q8WXQ3 324 aa19.14■□□□□ 0.65
VPS53-218ENST00000575207 KCNK12Q9HB15 430 aa19.14■□□□□ 0.65
VPS53-218ENST00000575207 DBR1Q9UK59 544 aaKnown RBP19.14■□□□□ 0.65
VPS53-218ENST00000575207 PNMA2Q9UL42 364 aa19.14■□□□□ 0.65
VPS53-218ENST00000575207 LZTS1Q9Y250 596 aa19.14■□□□□ 0.65
VPS53-218ENST00000575207 BPTFQ12830 3046 aa19.14■□□□□ 0.65
VPS53-218ENST00000575207 KIAA1217Q5T5P2 1943 aa19.13■□□□□ 0.65
VPS53-218ENST00000575207 POTEMA6NI47 508 aa19.13■□□□□ 0.65
VPS53-218ENST00000575207 PRDM1O75626 825 aa19.13■□□□□ 0.65
VPS53-218ENST00000575207 DCNP07585 359 aaKnown RBP19.13■□□□□ 0.65
VPS53-218ENST00000575207 PLPP4Q5VZY2 271 aa19.13■□□□□ 0.65
VPS53-218ENST00000575207 PHLDB3Q6NSJ2 640 aa19.13■□□□□ 0.65
VPS53-218ENST00000575207 POTEGQ6S5H5 508 aa19.13■□□□□ 0.65
VPS53-218ENST00000575207 BTNL9Q6UXG8 535 aa19.13■□□□□ 0.65
VPS53-218ENST00000575207 EPC1Q9H2F5 836 aa19.13■□□□□ 0.65
VPS53-218ENST00000575207 TBC1D17Q9HA65 648 aa19.13■□□□□ 0.65
VPS53-218ENST00000575207 NGRNQ9NPE2 291 aaKnown RBP19.13■□□□□ 0.65
VPS53-218ENST00000575207 AAASQ9NRG9 546 aa19.13■□□□□ 0.65
VPS53-218ENST00000575207 TMEM260Q9NX78 707 aa19.13■□□□□ 0.65
VPS53-218ENST00000575207 SMG5Q9UPR3 1016 aaKnown RBP19.13■□□□□ 0.65
VPS53-218ENST00000575207 PCDHGA2Q9Y5H1 932 aa19.13■□□□□ 0.65
VPS53-218ENST00000575207 HCFC2Q9Y5Z7 792 aa19.13■□□□□ 0.65
VPS53-218ENST00000575207 HIDE1A8MVS5 230 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 H3BRB1 525 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 WEE2P0C1S8 567 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 RFX1P22670 979 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 ATP8B2P98198 1209 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 UBE3CQ15386 1083 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 STXBP2Q15833 593 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 HSDL1Q3SXM5 330 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 ATAT1Q5SQI0 421 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 MYSM1Q5VVJ2 828 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 GIMAP6Q6P9H5 292 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 RTN4RL1Q86UN2 441 aaPredicted RBP19.12■□□□□ 0.65
VPS53-218ENST00000575207 AACSQ86V21 672 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 RGS22Q8NE09 1264 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 DNAJC2Q99543 621 aaKnown RBP19.12■□□□□ 0.65
VPS53-218ENST00000575207 TUT1Q9H6E5 874 aaKnown RBP19.12■□□□□ 0.65
VPS53-218ENST00000575207 SIT1Q9Y3P8 196 aa19.12■□□□□ 0.65
VPS53-218ENST00000575207 MINDY4BA8MYZ0 360 aa19.11■□□□□ 0.65
VPS53-218ENST00000575207 STAG3L1P0CL83 205 aa19.11■□□□□ 0.65
VPS53-218ENST00000575207 GNAT1P11488 350 aa19.11■□□□□ 0.65
VPS53-218ENST00000575207 RARSP54136 660 aaKnown RBP19.11■□□□□ 0.65
VPS53-218ENST00000575207 ADAM17P78536 824 aa19.11■□□□□ 0.65
VPS53-218ENST00000575207 XRRA1Q6P2D8 792 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms