RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TMPOP42166 694 aaKnown RBP7.43□□□□□ -1.22
VPS53-212ENST00000572259 PMS1P54277 932 aaKnown RBP7.43□□□□□ -1.22
VPS53-212ENST00000572259 TTF1Q15361 905 aaPredicted RBP7.43□□□□□ -1.22
VPS53-212ENST00000572259 RSPO4Q2I0M5 234 aaPredicted RBP7.43□□□□□ -1.22
VPS53-212ENST00000572259 ZNF765Q7L2R6 523 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 SLC51AQ86UW1 340 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 DNAJC10Q8IXB1 793 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 FAM178BQ8IXR5 827 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 SYNPOQ8N3V7 929 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 SHKBP1Q8TBC3 707 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 ARPC5LQ9BPX5 153 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 MKRN2Q9H000 416 aaKnown RBP7.43□□□□□ -1.22
VPS53-212ENST00000572259 TMX4Q9H1E5 349 aaPredicted RBP7.43□□□□□ -1.22
VPS53-212ENST00000572259 FAM86C1Q9NVL1 165 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 BABAM1Q9NWV8 329 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 MAP3K20Q9NYL2 800 aaKnown RBP7.43□□□□□ -1.22
VPS53-212ENST00000572259 ZNF214Q9UL59 606 aaPredicted RBP7.43□□□□□ -1.22
VPS53-212ENST00000572259 PCDHB10Q9UN67 800 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 ADAMTS7Q9UKP4 1686 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 ZNF500O60304 480 aaPredicted RBP7.42□□□□□ -1.22
VPS53-212ENST00000572259 CBX7O95931 251 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 TP53P04637 393 aaPredicted RBP7.42□□□□□ -1.22
VPS53-212ENST00000572259 CYP19A1P11511 503 aaPredicted RBP7.42□□□□□ -1.22
VPS53-212ENST00000572259 COL6A1P12109 1028 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 CALD1Q05682 793 aaKnown RBP7.42□□□□□ -1.22
VPS53-212ENST00000572259 SQSTM1Q13501 440 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 DCTN1Q14203 1278 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 MYBPC2Q14324 1141 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 NCAPHQ15003 741 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 TCEA2Q15560 299 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 MAPRE1Q15691 268 aaKnown RBP7.42□□□□□ -1.22
VPS53-212ENST00000572259 DDR2Q16832 855 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 NKAPLQ5M9Q1 402 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 NBPF12Q5TAG4 269 aaPredicted RBP7.42□□□□□ -1.22
VPS53-212ENST00000572259 KIAA1211LQ6NV74 962 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 C6orf15Q6UXA7 325 aaPredicted RBP7.42□□□□□ -1.22
VPS53-212ENST00000572259 FAM43BQ6ZT52 329 aaPredicted RBP7.42□□□□□ -1.22
VPS53-212ENST00000572259 JAMLQ86YT9 394 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 CCDC144CPQ8IYA2 1237 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 SHISA5Q8N114 240 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 CELF2-AS1Q8N7Q2 184 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 RNF141Q8WVD5 230 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 ZNF496Q96IT1 587 aaPredicted RBP7.42□□□□□ -1.22
VPS53-212ENST00000572259 ASPNQ9BXN1 380 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 MAPK8IP1Q9UQF2 711 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 HEG1Q9ULI3 1381 aa7.42□□□□□ -1.22
VPS53-212ENST00000572259 SIPA1L3O60292 1781 aaPredicted RBP7.41□□□□□ -1.22
VPS53-212ENST00000572259 DYRK3O43781 588 aa7.41□□□□□ -1.22
VPS53-212ENST00000572259 RASGRF1Q13972 1273 aa7.41□□□□□ -1.22
VPS53-212ENST00000572259 TKFCQ3LXA3 575 aa7.41□□□□□ -1.22
VPS53-212ENST00000572259 C2orf27AQ580R0 203 aa7.41□□□□□ -1.22
VPS53-212ENST00000572259 TDRD10Q5VZ19 366 aaKnown RBP7.41□□□□□ -1.22
VPS53-212ENST00000572259 SYT17Q9BSW7 474 aa7.41□□□□□ -1.22
VPS53-212ENST00000572259 LRRC4CQ9HCJ2 640 aa7.41□□□□□ -1.22
VPS53-212ENST00000572259 TSPYL4Q9UJ04 414 aa7.41□□□□□ -1.22
VPS53-212ENST00000572259 KCNH3Q9ULD8 1083 aa7.41□□□□□ -1.22
VPS53-212ENST00000572259 LEMD3Q9Y2U8 911 aa7.41□□□□□ -1.22
VPS53-212ENST00000572259 COL5A3P25940 1745 aaPredicted RBP7.41□□□□□ -1.22
VPS53-212ENST00000572259 IGF2BP3O00425 579 aaKnown RBP eCLIP7.4□□□□□ -1.22
VPS53-212ENST00000572259 GJB6O95452 261 aa7.4□□□□□ -1.22
VPS53-212ENST00000572259 IL6STP40189 918 aaPredicted RBP7.4□□□□□ -1.22
VPS53-212ENST00000572259 KIR3DL1P43629 444 aa7.4□□□□□ -1.22
VPS53-212ENST00000572259 INTS5Q6P9B9 1019 aaKnown RBP7.4□□□□□ -1.22
VPS53-212ENST00000572259 PAF1Q8N7H5 531 aa7.4□□□□□ -1.22
VPS53-212ENST00000572259 CHAC2Q8WUX2 184 aa7.4□□□□□ -1.22
VPS53-212ENST00000572259 FBXL18Q96ME1 805 aa7.4□□□□□ -1.22
VPS53-212ENST00000572259 HEXIM2Q96MH2 286 aaKnown RBP7.4□□□□□ -1.22
VPS53-212ENST00000572259 PAGR1Q9BTK6 254 aa7.4□□□□□ -1.22
VPS53-212ENST00000572259 INO80BQ9C086 356 aaPredicted RBP7.4□□□□□ -1.22
VPS53-212ENST00000572259 MCM8Q9UJA3 840 aa7.4□□□□□ -1.22
VPS53-212ENST00000572259 FBXL21Q9UKT6 434 aa7.4□□□□□ -1.22
VPS53-212ENST00000572259 CD2APQ9Y5K6 639 aa7.4□□□□□ -1.22
VPS53-212ENST00000572259 UBR2Q8IWV8 1755 aa7.4□□□□□ -1.23
VPS53-212ENST00000572259 SOS1Q07889 1333 aaPredicted RBP7.39□□□□□ -1.23
VPS53-212ENST00000572259 FAM155AB1AL88 458 aaPredicted RBP7.39□□□□□ -1.23
VPS53-212ENST00000572259 B2RBV5 119 aa7.39□□□□□ -1.23
VPS53-212ENST00000572259 APAF1O14727 1248 aa7.39□□□□□ -1.23
VPS53-212ENST00000572259 NPHP1O15259 732 aa7.39□□□□□ -1.23
VPS53-212ENST00000572259 KCNQ3O43525 872 aa7.39□□□□□ -1.23
VPS53-212ENST00000572259 SCGB1D2O95969 90 aa7.39□□□□□ -1.23
VPS53-212ENST00000572259 FURINP09958 794 aa7.39□□□□□ -1.23
VPS53-212ENST00000572259 CPSF6Q16630 551 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS53-212ENST00000572259 DALRD3Q5D0E6 543 aaKnown RBP7.39□□□□□ -1.23
VPS53-212ENST00000572259 HEATR6Q6AI08 1181 aaKnown RBP7.39□□□□□ -1.23
VPS53-212ENST00000572259 FAM214BQ7L5A3 538 aa7.39□□□□□ -1.23
VPS53-212ENST00000572259 ASCC2Q9H1I8 757 aaPredicted RBP7.39□□□□□ -1.23
VPS53-212ENST00000572259 SEMA6BQ9H3T3 888 aa7.39□□□□□ -1.23
VPS53-212ENST00000572259 CHST12Q9NRB3 414 aa7.39□□□□□ -1.23
VPS53-212ENST00000572259 MIS18AQ9NYP9 233 aa7.39□□□□□ -1.23
VPS53-212ENST00000572259 NARFQ9UHQ1 456 aa7.39□□□□□ -1.23
VPS53-212ENST00000572259 ZBTB1Q9Y2K1 713 aa7.39□□□□□ -1.23
VPS53-212ENST00000572259 RRP7AQ9Y3A4 280 aaKnown RBP7.39□□□□□ -1.23
VPS53-212ENST00000572259 TJP1Q07157 1748 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 COL24A1Q17RW2 1714 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 CICQ96RK0 1608 aaPredicted RBP7.38□□□□□ -1.23
VPS53-212ENST00000572259 KCPQ6ZWJ8 1503 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 COL15A1P39059 1388 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 USP42Q9H9J4 1324 aaKnown RBP7.38□□□□□ -1.23
VPS53-212ENST00000572259 C9IYK1 514 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 PDPK1O15530 556 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms