RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 TKFCQ3LXA3 575 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 TMEM63BQ5T3F8 832 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 NFRKBQ6P4R8 1299 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 KIAA1211Q6ZU35 1233 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 AACSQ86V21 672 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 GPR161Q8N6U8 529 aaKnown RBP6.96□□□□□ -1.3
VPS53-208ENST00000570650 CRBNQ96SW2 442 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 DNAJC2Q99543 621 aaKnown RBP6.96□□□□□ -1.3
VPS53-208ENST00000570650 RAD9AQ99638 391 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 UPF3BQ9BZI7 483 aaKnown RBP6.96□□□□□ -1.3
VPS53-208ENST00000570650 ZMYND15Q9H091 742 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 RNF146Q9NTX7 359 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 SERTAD1Q9UHV2 236 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 CTNNA3Q9UI47 895 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 SCN10AQ9Y5Y9 1956 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 LINC01553A4QN01 128 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 H3BQ06 376 aaPredicted RBP6.95□□□□□ -1.3
VPS53-208ENST00000570650 GOLIM4O00461 696 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 PARNO95453 639 aaKnown RBP6.95□□□□□ -1.3
VPS53-208ENST00000570650 RASA1P20936 1047 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 ADD2P35612 726 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 PHKA2P46019 1235 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 DEFB103AP81534 67 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 PTPROQ16827 1216 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 DUSP28Q4G0W2 176 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 TIGD5Q53EQ6 642 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 BRDTQ58F21 947 aaPredicted RBP6.95□□□□□ -1.3
VPS53-208ENST00000570650 TMEM214Q6NUQ4 689 aaKnown RBP6.95□□□□□ -1.3
VPS53-208ENST00000570650 CNKSR3Q6P9H4 555 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 CTR9Q6PD62 1173 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 TAS1R3Q7RTX0 852 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 TMCO2Q7Z6W1 182 aaPredicted RBP6.95□□□□□ -1.3
VPS53-208ENST00000570650 ERC1Q8IUD2 1116 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 ADHFE1Q8IWW8 467 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 RPAP2Q8IXW5 612 aaPredicted RBP6.95□□□□□ -1.3
VPS53-208ENST00000570650 PRSS33Q8NF86 280 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 OR6J1Q8NGC5 347 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 CAGE1Q8TC20 777 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 MORC4Q8TE76 937 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 AFAP1L1Q8TED9 768 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 ANKS1AQ92625 1134 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 MRPL38Q96DV4 380 aaKnown RBP6.95□□□□□ -1.3
VPS53-208ENST00000570650 PRRX2Q99811 253 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 ARPP21Q9UBL0 812 aaPredicted RBP6.95□□□□□ -1.3
VPS53-208ENST00000570650 CLIP2Q9UDT6 1046 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 SYNPO2Q9UMS6 1093 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 TNNQ9UQP3 1299 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 USP3Q9Y6I4 520 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 DDX49Q9Y6V7 483 aaKnown RBP6.95□□□□□ -1.3
VPS53-208ENST00000570650 PTPRSQ13332 1948 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 GREB1LQ9C091 1923 aaPredicted RBP6.95□□□□□ -1.3
VPS53-208ENST00000570650 ZBED9Q6R2W3 1325 aa6.95□□□□□ -1.3
VPS53-208ENST00000570650 SIP14410 1827 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 TRANK1O15050 2925 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 ABHD14A-ACY1A0A1B0GW23 586 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 KPNA6O60684 536 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 EFCAB14O75071 495 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 BMP3P12645 472 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 ALAS1P13196 640 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 IRS1P35568 1242 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 C4orf17Q53FE4 359 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 HERC4Q5GLZ8 1057 aaPredicted RBP6.94□□□□□ -1.3
VPS53-208ENST00000570650 LRRC8DQ7L1W4 858 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 BMP8AQ7Z5Y6 402 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 FAM160B2Q86V87 743 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 VWA5B2Q8N398 1253 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 TMEM57Q8N5G2 664 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS53-208ENST00000570650 GMCL1P1Q8NEA9 526 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 NANOS1Q8WY41 292 aaKnown RBP6.94□□□□□ -1.3
VPS53-208ENST00000570650 FRAT1Q92837 279 aaPredicted RBP6.94□□□□□ -1.3
VPS53-208ENST00000570650 MKL1Q969V6 931 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 PABPC5Q96DU9 382 aaKnown RBP6.94□□□□□ -1.3
VPS53-208ENST00000570650 TRERF1Q96PN7 1200 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 WDR11Q9BZH6 1224 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS53-208ENST00000570650 C1orf115Q9H7X2 142 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 MKNK2Q9HBH9 465 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 TIMMDC1Q9NPL8 285 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 ZNF358Q9NW07 568 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 SLC4A4Q9Y6R1 1079 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 RAD50Q92878 1312 aa6.94□□□□□ -1.3
VPS53-208ENST00000570650 TRIP12Q14669 1992 aaPredicted RBP6.93□□□□□ -1.3
VPS53-208ENST00000570650 LOC102724159A0A0B4J2E5 919 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 IGKV6D-41A0A0C4DH26 115 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 RBM47A0AV96 593 aaKnown RBP6.93□□□□□ -1.3
VPS53-208ENST00000570650 CDC14CA4D256 554 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 TMEM232C9JQI7 657 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 NKRFO15226 690 aaKnown RBP eCLIP6.93□□□□□ -1.3
VPS53-208ENST00000570650 CXCL10P02778 98 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 SELPP16109 830 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 STAT2P52630 851 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 SMTNP53814 917 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 IKQ13123 557 aaPredicted RBP6.93□□□□□ -1.3
VPS53-208ENST00000570650 GPNMBQ14956 572 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 PWP2Q15269 919 aaKnown RBP6.93□□□□□ -1.3
VPS53-208ENST00000570650 PKN1Q16512 942 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 PTGISQ16647 500 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 SBK1Q52WX2 424 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 MUM1L1Q5H9M0 696 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms