RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 POTEMA6NI47 508 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 DDX39AO00148 427 aaKnown RBP10.5□□□□□ -0.73
VPS35-211ENST00000569950 MSCO60682 206 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 RARBP10826 455 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 ATP4AP20648 1035 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 PRPHP41219 470 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 FXR2P51116 673 aaKnown RBP eCLIP10.5□□□□□ -0.738e-12■■■□□ 17.3
VPS35-211ENST00000569950 NUCB2P80303 420 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 PURAQ00577 322 aaKnown RBP10.5□□□□□ -0.73
VPS35-211ENST00000569950 LAMC2Q13753 1193 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 HIC1Q14526 733 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 CALCRLQ16602 461 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 FSCN1Q16658 493 aaKnown RBP10.5□□□□□ -0.73
VPS35-211ENST00000569950 UGCGQ16739 394 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 AXDND1Q5T1B0 1012 aaPredicted RBP10.5□□□□□ -0.73
VPS35-211ENST00000569950 LRCH2Q5VUJ6 765 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 TRIM50Q86XT4 487 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 CCDC60Q8IWA6 550 aaPredicted RBP10.5□□□□□ -0.73
VPS35-211ENST00000569950 DHX37Q8IY37 1157 aaKnown RBP10.5□□□□□ -0.73
VPS35-211ENST00000569950 OR6J1Q8NGC5 347 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 DIS3LQ8TF46 1054 aaKnown RBP10.5□□□□□ -0.73
VPS35-211ENST00000569950 LRRC15Q8TF66 581 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 SPATA33Q96N06 139 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 NAP1L4Q99733 375 aaKnown RBP10.5□□□□□ -0.73
VPS35-211ENST00000569950 JPH1Q9HDC5 661 aaPredicted RBP10.5□□□□□ -0.73
VPS35-211ENST00000569950 TBC1D22BQ9NU19 505 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 SLC9A2Q9UBY0 812 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 DAXXQ9UER7 740 aaPredicted RBP10.5□□□□□ -0.73
VPS35-211ENST00000569950 RCOR1Q9UKL0 485 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 ELP1O95163 1332 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 KAT6AQ92794 2004 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 EVPLQ92817 2033 aa10.5□□□□□ -0.73
VPS35-211ENST00000569950 PP2D1A8MPX8 630 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 HAS3O00219 553 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 ZNF862O60290 1169 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 GAS7O60861 476 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 F2P00734 622 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 SPATA31C1P0DKV0 1188 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 TXKP42681 527 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 CEBPZQ03701 1054 aaKnown RBP10.49□□□□□ -0.73
VPS35-211ENST00000569950 KCNA10Q16322 511 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 ZNF746Q6NUN9 644 aaPredicted RBP10.49□□□□□ -0.73
VPS35-211ENST00000569950 USP49Q70CQ1 688 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 GIMAP8Q8ND71 665 aaPredicted RBP10.49□□□□□ -0.73
VPS35-211ENST00000569950 HSD17B14Q9BPX1 270 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 TTC12Q9H892 705 aaPredicted RBP10.49□□□□□ -0.73
VPS35-211ENST00000569950 CHMP5Q9NZZ3 219 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 PHF24Q9UPV7 400 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 EMSYQ7Z589 1322 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 IGSF9BQ9UPX0 1349 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 SIP14410 1827 aa10.49□□□□□ -0.73
VPS35-211ENST00000569950 ZBTB42B2RXF5 422 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 RBAK-RBAKDNI3L0D1 243 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 LAD1O00515 517 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 PPFIA4O75335 1185 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 YEATS4O95619 227 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 LGALS2P05162 132 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 ASGR1P07306 291 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 C6orf222P0C671 652 aaPredicted RBP10.48□□□□□ -0.73
VPS35-211ENST00000569950 SUPT20HL2P0C7V6 817 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 ZNF286BP0CG31 522 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 EN2P19622 333 aaPredicted RBP10.48□□□□□ -0.73
VPS35-211ENST00000569950 MARCKSP29966 332 aaPredicted RBP10.48□□□□□ -0.73
VPS35-211ENST00000569950 CDC25AP30304 524 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 HOXC8P31273 242 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 TCF7P36402 384 aaPredicted RBP10.48□□□□□ -0.73
VPS35-211ENST00000569950 KRT76Q01546 638 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 SP4Q02446 784 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 ECM1Q16610 540 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 ARL6IP4Q66PJ3 421 aaKnown RBP10.48□□□□□ -0.73
VPS35-211ENST00000569950 CXCL17Q6UXB2 119 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 CLEC17AQ6ZS10 378 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 SLFN12Q8IYM2 578 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 SLC43A3Q8NBI5 491 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 AFAP1L1Q8TED9 768 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 PPP1R13LQ8WUF5 828 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 LEO1Q8WVC0 666 aaPredicted RBP10.48□□□□□ -0.73
VPS35-211ENST00000569950 TNPO1Q92973 898 aaKnown RBP10.48□□□□□ -0.73
VPS35-211ENST00000569950 CLIC6Q96NY7 704 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 CTAGE1Q96RT6 745 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 CEP89Q96ST8 783 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 SDF4Q9BRK5 362 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 TSEN34Q9BSV6 310 aaKnown RBP10.48□□□□□ -0.73
VPS35-211ENST00000569950 TEKT3Q9BXF9 490 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 MLXIPQ9HAP2 919 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 DISC1Q9NRI5 854 aa10.48□□□□□ -0.73
VPS35-211ENST00000569950 MAFBQ9Y5Q3 323 aaPredicted RBP10.48□□□□□ -0.73
VPS35-211ENST00000569950 LOXHD1Q8IVV2 1947 aa10.47□□□□□ -0.73
VPS35-211ENST00000569950 A0A1W2PQ45 241 aaPredicted RBP10.47□□□□□ -0.73
VPS35-211ENST00000569950 A0A1W2PQY0 241 aa10.47□□□□□ -0.73
VPS35-211ENST00000569950 DNM1LO00429 736 aa10.47□□□□□ -0.73
VPS35-211ENST00000569950 CHMP2AO43633 222 aa10.47□□□□□ -0.73
VPS35-211ENST00000569950 MED24O75448 989 aa10.47□□□□□ -0.73
VPS35-211ENST00000569950 TECP42680 631 aa10.47□□□□□ -0.73
VPS35-211ENST00000569950 ACLYP53396 1101 aa10.47□□□□□ -0.73
VPS35-211ENST00000569950 GNASQ5JWF2 1037 aa10.47□□□□□ -0.73
VPS35-211ENST00000569950 ATL3Q6DD88 541 aa10.47□□□□□ -0.73
VPS35-211ENST00000569950 SMAP1Q8IYB5 467 aaPredicted RBP10.47□□□□□ -0.73
VPS35-211ENST00000569950 SEPT1Q8WYJ6 367 aa10.47□□□□□ -0.73
VPS35-211ENST00000569950 RGL1Q9NZL6 768 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms