RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 LY9Q9HBG7 655 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 SUCLA2Q9P2R7 463 aaPredicted RBP11.83□□□□□ -0.52
CLK3-226ENST00000569406 PCDHA7Q9UN72 937 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 ZNF804BA4D1E1 1349 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 NID2Q14112 1375 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 TAF1LQ8IZX4 1826 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 KLF18A0A0U1RQI7 1052 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 A8MUI8 341 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 BCAMP50895 628 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 NEK2P51955 445 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 MCL1Q07820 350 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 MIGA2Q7L4E1 593 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 LINC00301Q8NCQ3 95 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 PRKAB2O43741 272 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 SLC51AQ86UW1 340 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 APLFQ8IW19 511 aaPredicted RBP11.82□□□□□ -0.52
CLK3-226ENST00000569406 LINC00116Q8NCU8 138 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 BHMTQ93088 406 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 SCOCQ9UIL1 159 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 PNMA2Q9UL42 364 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 INTUQ9ULD6 942 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 ZNF213O14771 459 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 ADAMTS2O95450 1211 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 LBRQ14739 615 aaKnown RBP11.82□□□□□ -0.52
CLK3-226ENST00000569406 BARGINQ6ZT62 677 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 RALYLQ86SE5 291 aaKnown RBP11.82□□□□□ -0.52
CLK3-226ENST00000569406 CCDC82Q8N4S0 544 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 NCOA7Q8NI08 942 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.82□□□□□ -0.52
CLK3-226ENST00000569406 BTAF1O14981 1849 aa11.82□□□□□ -0.52
CLK3-226ENST00000569406 ATP9BO43861 1147 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 HIP1RO75146 1068 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 TPPPO94811 219 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 FGFR1OPO95684 399 aaKnown RBP11.81□□□□□ -0.52
CLK3-226ENST00000569406 PYGMP11217 842 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 MARCKSP29966 332 aaPredicted RBP11.81□□□□□ -0.52
CLK3-226ENST00000569406 KCNQ4P56696 695 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 KCNJ2P63252 427 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 TC2NQ8N9U0 490 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 TSEN2Q8NCE0 465 aaKnown RBP11.81□□□□□ -0.52
CLK3-226ENST00000569406 SH3GL1Q99961 368 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 LUC7LQ9NQ29 371 aaKnown RBP11.81□□□□□ -0.52
CLK3-226ENST00000569406 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLK3-226ENST00000569406 ADGRG1Q9Y653 693 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 TNRC6CQ9HCJ0 1690 aaKnown RBP11.81□□□□□ -0.52
CLK3-226ENST00000569406 MYH2Q9UKX2 1941 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 MROH7-TTC4A0A0A0MT08 1334 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 HTR3EA5X5Y0 456 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 PPIP5K2O43314 1243 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 ETS2P15036 469 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 MATR3P43243 847 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLK3-226ENST00000569406 SEPT7Q16181 437 aaKnown RBP11.81□□□□□ -0.52
CLK3-226ENST00000569406 LACTB2Q53H82 288 aaPredicted RBP11.81□□□□□ -0.52
CLK3-226ENST00000569406 ODF2Q5BJF6 829 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 APOA5Q6Q788 366 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 POTEEQ6S8J3 1075 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 ZNF554Q86TJ5 538 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLK3-226ENST00000569406 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLK3-226ENST00000569406 CCT6BQ92526 530 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 ZIM3Q96PE6 472 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 INIPQ9NRY2 104 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 ZSWIM5Q9P217 1185 aa11.81□□□□□ -0.52
CLK3-226ENST00000569406 B4E1Z4 1266 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 IDH1O75874 414 aaKnown RBP11.8□□□□□ -0.52
CLK3-226ENST00000569406 RXRAP19793 462 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 PHEXP78562 749 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 ATP11AP98196 1134 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 KIF23Q02241 960 aaPredicted RBP11.8□□□□□ -0.52
CLK3-226ENST00000569406 KRT72Q14CN4 511 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 NCAPHQ15003 741 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 CFAP58Q5T655 872 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 C6orf183Q5T699 404 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 SGMS1Q86VZ5 419 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 MAP7D3Q8IWC1 876 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 TTC30BQ8N4P2 665 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 ZNF713Q8N859 430 aaPredicted RBP11.8□□□□□ -0.52
CLK3-226ENST00000569406 DEPTORQ8TB45 409 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 ATP6V0A1Q93050 837 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 AASDHPPTQ9NRN7 309 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 EXOC1Q9NV70 894 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 KIAA1468Q9P260 1216 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 GOLGA8BA8MQT2 603 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 PHF20L1A8MW92 1017 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 IKBKBO14920 756 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 TRIM37O94972 964 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 ALDH5A1P51649 535 aaPredicted RBP11.8□□□□□ -0.52
CLK3-226ENST00000569406 TTF1Q15361 905 aaPredicted RBP11.8□□□□□ -0.52
CLK3-226ENST00000569406 CCNJLQ8IV13 435 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 SIX5Q8N196 739 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 LCORLQ8N3X6 602 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 FBF1Q8TES7 1133 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 SLC39A3Q9BRY0 314 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 TUBA8Q9NY65 449 aaPredicted RBP11.8□□□□□ -0.52
CLK3-226ENST00000569406 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.8□□□□□ -0.52
CLK3-226ENST00000569406 MYH13Q9UKX3 1938 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 THSD7AQ9UPZ6 1657 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 GNA14O95837 355 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 BCRP11274 1271 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 MTTPP55157 894 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms