RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 CHD7Q9P2D1 2997 aa20.99■□□□□ 0.95
CLN3-237ENST00000569030 ZBBXA8MT70 800 aa20.98■□□□□ 0.95
CLN3-237ENST00000569030 TREHO43280 583 aa20.98■□□□□ 0.95
CLN3-237ENST00000569030 ARHGAP4P98171 946 aa20.98■□□□□ 0.95
CLN3-237ENST00000569030 ZNF618Q5T7W0 954 aa20.98■□□□□ 0.95
CLN3-237ENST00000569030 CCDC12Q8WUD4 166 aaPredicted RBP20.98■□□□□ 0.95
CLN3-237ENST00000569030 SEPT1Q8WYJ6 367 aa20.98■□□□□ 0.95
CLN3-237ENST00000569030 ATP6V0A1Q93050 837 aa20.98■□□□□ 0.95
CLN3-237ENST00000569030 CDX2Q99626 313 aaPredicted RBP20.98■□□□□ 0.95
CLN3-237ENST00000569030 SETD4Q9NVD3 440 aa20.98■□□□□ 0.95
CLN3-237ENST00000569030 VPS54Q9P1Q0 977 aa20.98■□□□□ 0.95
CLN3-237ENST00000569030 SLC4A7Q9Y6M7 1214 aa20.98■□□□□ 0.95
CLN3-237ENST00000569030 WDR81Q562E7 1941 aa20.98■□□□□ 0.95
CLN3-237ENST00000569030 FAM86B1E9PN63 330 aa20.97■□□□□ 0.95
CLN3-237ENST00000569030 NBNO60934 754 aa20.97■□□□□ 0.95
CLN3-237ENST00000569030 SEC24BO95487 1268 aa20.97■□□□□ 0.95
CLN3-237ENST00000569030 FAM86B2P0C5J1 330 aa20.97■□□□□ 0.95
CLN3-237ENST00000569030 ITGB3BPQ13352 177 aaPredicted RBP20.97■□□□□ 0.95
CLN3-237ENST00000569030 REXO1Q8N1G1 1221 aaKnown RBP20.97■□□□□ 0.95
CLN3-237ENST00000569030 RASGRP4Q8TDF6 673 aa20.97■□□□□ 0.95
CLN3-237ENST00000569030 TIFAQ96CG3 184 aa20.97■□□□□ 0.95
CLN3-237ENST00000569030 AGO4Q9HCK5 861 aaKnown RBP20.97■□□□□ 0.95
CLN3-237ENST00000569030 ZNF215Q9UL58 517 aaPredicted RBP20.97■□□□□ 0.95
CLN3-237ENST00000569030 TMEM265A0A087WTH1 108 aa20.96■□□□□ 0.95
CLN3-237ENST00000569030 CYP3A4P08684 503 aa20.96■□□□□ 0.95
CLN3-237ENST00000569030 GNA11P29992 359 aa20.96■□□□□ 0.95
CLN3-237ENST00000569030 ZNF76P36508 570 aa20.96■□□□□ 0.95
CLN3-237ENST00000569030 RABGGTBP53611 331 aa20.96■□□□□ 0.95
CLN3-237ENST00000569030 ANAPC15P60006 121 aa20.96■□□□□ 0.95
CLN3-237ENST00000569030 ADAM17P78536 824 aa20.96■□□□□ 0.95
CLN3-237ENST00000569030 SSRP1Q08945 709 aaKnown RBP20.96■□□□□ 0.95
CLN3-237ENST00000569030 MBTPS1Q14703 1052 aa20.96■□□□□ 0.95
CLN3-237ENST00000569030 PCYT2Q99447 389 aa20.96■□□□□ 0.95
CLN3-237ENST00000569030 JPH1Q9HDC5 661 aaPredicted RBP20.96■□□□□ 0.95
CLN3-237ENST00000569030 SLC9A2Q9UBY0 812 aa20.96■□□□□ 0.95
CLN3-237ENST00000569030 A0A0C4DFX4 3053 aa20.96■□□□□ 0.95
CLN3-237ENST00000569030 NFASCO94856 1347 aa20.96■□□□□ 0.95
CLN3-237ENST00000569030 MYH9P35579 1960 aaKnown RBP20.96■□□□□ 0.95
CLN3-237ENST00000569030 IGLV3-22A0A075B6J6 115 aa20.95■□□□□ 0.94
CLN3-237ENST00000569030 CXCL10P02778 98 aa20.95■□□□□ 0.94
CLN3-237ENST00000569030 ACTN1P12814 892 aa20.95■□□□□ 0.94
CLN3-237ENST00000569030 THPOP40225 353 aa20.95■□□□□ 0.94
CLN3-237ENST00000569030 GRIN2CQ14957 1233 aa20.95■□□□□ 0.94
CLN3-237ENST00000569030 TCTN1Q2MV58 587 aa20.95■□□□□ 0.94
CLN3-237ENST00000569030 NIPA1Q7RTP0 329 aa20.95■□□□□ 0.94
CLN3-237ENST00000569030 TRIM22Q8IYM9 498 aa20.95■□□□□ 0.94
CLN3-237ENST00000569030 LMBR1Q8WVP7 490 aa20.95■□□□□ 0.94
CLN3-237ENST00000569030 UIMC1Q96RL1 719 aa20.95■□□□□ 0.94
CLN3-237ENST00000569030 ZNF576Q9H609 170 aa20.95■□□□□ 0.94
CLN3-237ENST00000569030 SH3GLB2Q9NR46 395 aa20.95■□□□□ 0.94
CLN3-237ENST00000569030 TPCN1Q9ULQ1 816 aa20.95■□□□□ 0.94
CLN3-237ENST00000569030 YBX2Q9Y2T7 364 aaKnown RBP20.95■□□□□ 0.94
CLN3-237ENST00000569030 TRANK1O15050 2925 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 PRUNE2Q8WUY3 3088 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 CPLX1O14810 134 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 EDIL3O43854 480 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 LGR5O75473 907 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 MYOGP15173 224 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 ATP2A2P16615 1042 aaKnown RBP20.94■□□□□ 0.94
CLN3-237ENST00000569030 MARK3P27448 753 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 SCRN1Q12765 414 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 MCTP2Q6DN12 878 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 PLA2G4DQ86XP0 818 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 CCDC148Q8NFR7 591 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 MYLIPQ8WY64 445 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 IL17RAQ96F46 866 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 SDF4Q9BRK5 362 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 ERAP1Q9NZ08 941 aa20.94■□□□□ 0.94
CLN3-237ENST00000569030 DTNBO60941 627 aa20.93■□□□□ 0.94
CLN3-237ENST00000569030 PARNO95453 639 aaKnown RBP20.93■□□□□ 0.94
CLN3-237ENST00000569030 GNAT1P11488 350 aa20.93■□□□□ 0.94
CLN3-237ENST00000569030 ACTR2P61160 394 aa20.93■□□□□ 0.94
CLN3-237ENST00000569030 RAB30Q15771 203 aa20.93■□□□□ 0.94
CLN3-237ENST00000569030 BICD2Q8TD16 824 aa20.93■□□□□ 0.94
CLN3-237ENST00000569030 GLG1Q92896 1179 aa20.93■□□□□ 0.94
CLN3-237ENST00000569030 AIFM3Q96NN9 605 aa20.93■□□□□ 0.94
CLN3-237ENST00000569030 NKX2-4Q9H2Z4 354 aa20.93■□□□□ 0.94
CLN3-237ENST00000569030 SMARCAD1Q9H4L7 1026 aa20.93■□□□□ 0.94
CLN3-237ENST00000569030 MSRAQ9UJ68 235 aa20.93■□□□□ 0.94
CLN3-237ENST00000569030 MICAL3Q7RTP6 2002 aa20.93■□□□□ 0.94
CLN3-237ENST00000569030 UNC80Q8N2C7 3258 aa20.93■□□□□ 0.94
CLN3-237ENST00000569030 SIP14410 1827 aa20.92■□□□□ 0.94
CLN3-237ENST00000569030 LOXHD1Q8IVV2 1947 aa20.92■□□□□ 0.94
CLN3-237ENST00000569030 RSPH10B2B2RC85 870 aa20.92■□□□□ 0.94
CLN3-237ENST00000569030 DDX39AO00148 427 aaKnown RBP20.92■□□□□ 0.94
CLN3-237ENST00000569030 DHX15O43143 795 aaKnown RBP20.92■□□□□ 0.94
CLN3-237ENST00000569030 DEXIO95424 95 aa20.92■□□□□ 0.94
CLN3-237ENST00000569030 RSPH10BP0C881 870 aa20.92■□□□□ 0.94
CLN3-237ENST00000569030 AK2P54819 239 aa20.92■□□□□ 0.94
CLN3-237ENST00000569030 NLRP5P59047 1200 aa20.92■□□□□ 0.94
CLN3-237ENST00000569030 OSBPL7Q9BZF2 842 aa20.92■□□□□ 0.94
CLN3-237ENST00000569030 EMSYQ7Z589 1322 aa20.92■□□□□ 0.94
CLN3-237ENST00000569030 NRCAMQ92823 1304 aa20.92■□□□□ 0.94
CLN3-237ENST00000569030 PFKFB2O60825 505 aa20.91■□□□□ 0.94
CLN3-237ENST00000569030 BAIAP3O94812 1187 aa20.91■□□□□ 0.94
CLN3-237ENST00000569030 ATG7O95352 703 aa20.91■□□□□ 0.94
CLN3-237ENST00000569030 CCNE2O96020 404 aa20.91■□□□□ 0.94
CLN3-237ENST00000569030 PPFIA1Q13136 1202 aa20.91■□□□□ 0.94
CLN3-237ENST00000569030 MARCH8Q5T0T0 291 aa20.91■□□□□ 0.94
CLN3-237ENST00000569030 CNKSR3Q6P9H4 555 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms