RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 KIAA1551Q9HCM1 1747 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 WNK3Q9BYP7 1800 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 EYSQ5T1H1 3165 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 TISP43B9A030 160 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 B9A039 149 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 C19orf81C9J6K1 198 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 M0R3H8 397 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 TCERG1O14776 1098 aaKnown RBP3.59□□□□□ -1.83
VPS35-209ENST00000568642 BRINP1O60477 761 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 DNAJA2O60884 412 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 PHACTR2O75167 634 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 GADD45BO75293 160 aaPredicted RBP3.59□□□□□ -1.83
VPS35-209ENST00000568642 KRT37O76014 449 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 INMTO95050 263 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 LTFP02788 710 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 CYP2E1P05181 493 aaPredicted RBP3.59□□□□□ -1.83
VPS35-209ENST00000568642 NBPF7P0C2Y1 421 aaPredicted RBP3.59□□□□□ -1.83
VPS35-209ENST00000568642 ZKSCAN1P17029 563 aaPredicted RBP3.59□□□□□ -1.83
VPS35-209ENST00000568642 CD33P20138 364 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 BMP6P22004 513 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 GUCY2CP25092 1073 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 MSX1P28360 303 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 ADD2P35612 726 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 CD97P48960 835 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 PPM1FP49593 454 aaPredicted RBP3.59□□□□□ -1.83
VPS35-209ENST00000568642 NEXNQ0ZGT2 675 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 TBX2Q13207 712 aaPredicted RBP3.59□□□□□ -1.83
VPS35-209ENST00000568642 TRIM28Q13263 835 aaKnown RBP3.59□□□□□ -1.83
VPS35-209ENST00000568642 GTF2H3Q13889 308 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 IDI1Q13907 227 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 PTPN21Q16825 1174 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 NBPF1Q3BBV0 1214 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 EFHC2Q5JST6 749 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 WWC2Q6AWC2 1192 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 TTBK2Q6IQ55 1244 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 FAM180BQ6P0A1 224 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 C1orf228Q6PIY5 440 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 GK5Q6ZS86 529 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 C8orf86Q6ZUL3 223 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 MAATS1Q7Z4T9 603 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 ZNF354CQ86Y25 554 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 FAM186BQ8IYM0 893 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 SLC35G2Q8TBE7 412 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 ADAMTS18Q8TE60 1221 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.59□□□□□ -1.83
VPS35-209ENST00000568642 GAL3ST3Q96A11 431 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 HVCN1Q96D96 273 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 CLIP3Q96DZ5 547 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 ZNF496Q96IT1 587 aaPredicted RBP3.59□□□□□ -1.83
VPS35-209ENST00000568642 PAWRQ96IZ0 340 aaKnown RBP3.59□□□□□ -1.83
VPS35-209ENST00000568642 TAAR9Q96RI9 348 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 FERD3LQ96RJ6 166 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 ISCA1Q9BUE6 129 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 EFCC1Q9HA90 598 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 MAN1C1Q9NR34 630 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 SH3GLB2Q9NR46 395 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 ABT1Q9ULW3 272 aaKnown RBP3.59□□□□□ -1.83
VPS35-209ENST00000568642 ANKRD6Q9Y2G4 727 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 TNPO3Q9Y5L0 923 aaKnown RBP3.59□□□□□ -1.83
VPS35-209ENST00000568642 PASKQ96RG2 1323 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 BRD4O60885 1362 aaPredicted RBP3.59□□□□□ -1.83
VPS35-209ENST00000568642 MTUS2Q5JR59 1369 aa3.59□□□□□ -1.83
VPS35-209ENST00000568642 CCDC144AA2RUR9 1427 aa3.59□□□□□ -1.84
VPS35-209ENST00000568642 USP6P35125 1406 aa3.59□□□□□ -1.84
VPS35-209ENST00000568642 ZNF318Q5VUA4 2279 aa3.59□□□□□ -1.84
VPS35-209ENST00000568642 TPRP12270 2363 aaKnown RBP3.59□□□□□ -1.84
VPS35-209ENST00000568642 TRPM1Q7Z4N2 1603 aa3.59□□□□□ -1.84
VPS35-209ENST00000568642 NHSQ6T4R5 1651 aa3.59□□□□□ -1.84
VPS35-209ENST00000568642 QRICH2Q9H0J4 1663 aa3.59□□□□□ -1.84
VPS35-209ENST00000568642 RGPD8O14715 1765 aaPredicted RBP3.58□□□□□ -1.84
VPS35-209ENST00000568642 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.58□□□□□ -1.84
VPS35-209ENST00000568642 C9orf172C9J069 976 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 TGFBR3LH3BV60 316 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 TOR1BO14657 336 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 MED26O95402 600 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 HRGP04196 525 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 RPLP1P05386 114 aaKnown RBP3.58□□□□□ -1.84
VPS35-209ENST00000568642 PYGLP06737 847 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 GALNSP34059 522 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 GRIA2P42262 883 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 RAD52P43351 418 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 TDO2P48775 406 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 ZNF165P49910 485 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 AK2P54819 239 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 GP2P55259 537 aaKnown RBP3.58□□□□□ -1.84
VPS35-209ENST00000568642 KRT85P78386 507 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 TMPRSS15P98073 1019 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 PFKPQ01813 784 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 WASHC5Q12768 1159 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 MAP7Q14244 749 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 MSL1Q68DK7 614 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 TLDC1Q6P9B6 456 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 SHISA2Q6UWI4 295 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 TPTE2Q6XPS3 522 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 PPM1KQ8N3J5 372 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 TAB3Q8N5C8 712 aaPredicted RBP3.58□□□□□ -1.84
VPS35-209ENST00000568642 LSMEM1Q8N8F7 131 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 APPL2Q8NEU8 664 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 STK35Q8TDR2 534 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 RSRC1Q96IZ7 334 aaKnown RBP3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms