RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 GNL2Q13823 731 aaKnown RBP22.14■■□□□ 1.14
CLN3-225ENST00000566824 C1orf53Q5VUE5 145 aa22.14■■□□□ 1.14
CLN3-225ENST00000566824 SEPT1Q8WYJ6 367 aa22.14■■□□□ 1.14
CLN3-225ENST00000566824 KCNMB3Q9NPA1 279 aa22.14■■□□□ 1.14
CLN3-225ENST00000566824 PQBP1O60828 265 aaKnown RBP22.13■■□□□ 1.13
CLN3-225ENST00000566824 PSMD10O75832 226 aa22.13■■□□□ 1.13
CLN3-225ENST00000566824 GCFC2P16383 781 aaKnown RBP22.13■■□□□ 1.13
CLN3-225ENST00000566824 HIC1Q14526 733 aa22.13■■□□□ 1.13
CLN3-225ENST00000566824 MFSD10Q14728 455 aa22.13■■□□□ 1.13
CLN3-225ENST00000566824 TMEM60Q9H2L4 133 aa22.13■■□□□ 1.13
CLN3-225ENST00000566824 UNC45AQ9H3U1 944 aa22.13■■□□□ 1.13
CLN3-225ENST00000566824 TBC1D22BQ9NU19 505 aa22.13■■□□□ 1.13
CLN3-225ENST00000566824 VPS37CA5D8V6 355 aaPredicted RBP22.12■■□□□ 1.13
CLN3-225ENST00000566824 EVI5O60447 810 aa22.12■■□□□ 1.13
CLN3-225ENST00000566824 ATG7O95352 703 aa22.12■■□□□ 1.13
CLN3-225ENST00000566824 ZNF174Q15697 407 aa22.12■■□□□ 1.13
CLN3-225ENST00000566824 KIAA0753Q2KHM9 967 aa22.12■■□□□ 1.13
CLN3-225ENST00000566824 LRCH2Q5VUJ6 765 aa22.12■■□□□ 1.13
CLN3-225ENST00000566824 ABHD15Q6UXT9 468 aa22.12■■□□□ 1.13
CLN3-225ENST00000566824 SH3RF1Q7Z6J0 888 aa22.12■■□□□ 1.13
CLN3-225ENST00000566824 FERMT3Q86UX7 667 aa22.12■■□□□ 1.13
CLN3-225ENST00000566824 TRPV6Q9H1D0 765 aa22.12■■□□□ 1.13
CLN3-225ENST00000566824 MYH9P35579 1960 aaKnown RBP22.12■■□□□ 1.13
CLN3-225ENST00000566824 H3BRB1 525 aa22.11■■□□□ 1.13
CLN3-225ENST00000566824 RBAK-RBAKDNI3L0D1 243 aa22.11■■□□□ 1.13
CLN3-225ENST00000566824 GAS7O60861 476 aa22.11■■□□□ 1.13
CLN3-225ENST00000566824 LGR5O75473 907 aa22.11■■□□□ 1.13
CLN3-225ENST00000566824 MCM7P33993 719 aa22.11■■□□□ 1.13
CLN3-225ENST00000566824 B3GNT9Q6UX72 402 aa22.11■■□□□ 1.13
CLN3-225ENST00000566824 ANKRD33Q7Z3H0 272 aa22.11■■□□□ 1.13
CLN3-225ENST00000566824 FAM126BQ8IXS8 530 aa22.11■■□□□ 1.13
CLN3-225ENST00000566824 RIT2Q99578 217 aa22.11■■□□□ 1.13
CLN3-225ENST00000566824 TUT1Q9H6E5 874 aaKnown RBP22.11■■□□□ 1.13
CLN3-225ENST00000566824 CHMP2AO43633 222 aa22.1■■□□□ 1.13
CLN3-225ENST00000566824 FAAP100Q0VG06 881 aa22.1■■□□□ 1.13
CLN3-225ENST00000566824 FAM47CQ5HY64 1035 aa22.1■■□□□ 1.13
CLN3-225ENST00000566824 TTC38Q5R3I4 469 aa22.1■■□□□ 1.13
CLN3-225ENST00000566824 CCDC60Q8IWA6 550 aaPredicted RBP22.1■■□□□ 1.13
CLN3-225ENST00000566824 NAP1L4Q99733 375 aaKnown RBP22.1■■□□□ 1.13
CLN3-225ENST00000566824 TEKT3Q9BXF9 490 aa22.1■■□□□ 1.13
CLN3-225ENST00000566824 RNPEPQ9H4A4 650 aa22.1■■□□□ 1.13
CLN3-225ENST00000566824 TRMT13Q9NUP7 481 aaKnown RBP22.1■■□□□ 1.13
CLN3-225ENST00000566824 HDAC6Q9UBN7 1215 aa22.1■■□□□ 1.13
CLN3-225ENST00000566824 VAV3Q9UKW4 847 aa22.1■■□□□ 1.13
CLN3-225ENST00000566824 ZMYND8Q9ULU4 1186 aaPredicted RBP22.1■■□□□ 1.13
CLN3-225ENST00000566824 MTMR6Q9Y217 621 aa22.1■■□□□ 1.13
CLN3-225ENST00000566824 PCDHB6Q9Y5E3 794 aa22.1■■□□□ 1.13
CLN3-225ENST00000566824 IGKV6D-21A0A0A0MT36 114 aa22.09■■□□□ 1.13
CLN3-225ENST00000566824 B4GALT4O60513 344 aa22.09■■□□□ 1.13
CLN3-225ENST00000566824 CD4P01730 458 aa22.09■■□□□ 1.13
CLN3-225ENST00000566824 SUPT20HL2P0C7V6 817 aa22.09■■□□□ 1.13
CLN3-225ENST00000566824 SYN1P17600 705 aa22.09■■□□□ 1.13
CLN3-225ENST00000566824 MARK3P27448 753 aa22.09■■□□□ 1.13
CLN3-225ENST00000566824 ZNF200P98182 395 aaPredicted RBP22.09■■□□□ 1.13
CLN3-225ENST00000566824 ZNF746Q6NUN9 644 aaPredicted RBP22.09■■□□□ 1.13
CLN3-225ENST00000566824 MTMR9Q96QG7 549 aa22.09■■□□□ 1.13
CLN3-225ENST00000566824 CTAGE1Q96RT6 745 aa22.09■■□□□ 1.13
CLN3-225ENST00000566824 PDLIM7Q9NR12 457 aa22.09■■□□□ 1.13
CLN3-225ENST00000566824 TRIM43BA6NCK2 446 aa22.08■■□□□ 1.13
CLN3-225ENST00000566824 EML1O00423 815 aa22.08■■□□□ 1.13
CLN3-225ENST00000566824 NEMFO60524 1076 aa22.08■■□□□ 1.13
CLN3-225ENST00000566824 PDCP20941 246 aa22.08■■□□□ 1.13
CLN3-225ENST00000566824 KRT76Q01546 638 aa22.08■■□□□ 1.13
CLN3-225ENST00000566824 GDF6Q6KF10 455 aaPredicted RBP22.08■■□□□ 1.13
CLN3-225ENST00000566824 SWSAP1Q6NVH7 229 aa22.08■■□□□ 1.13
CLN3-225ENST00000566824 NFRKBQ6P4R8 1299 aa22.08■■□□□ 1.13
CLN3-225ENST00000566824 EMSYQ7Z589 1322 aa22.08■■□□□ 1.13
CLN3-225ENST00000566824 C4orf32Q8N8J7 132 aa22.08■■□□□ 1.13
CLN3-225ENST00000566824 KAT6AQ92794 2004 aa22.08■■□□□ 1.13
CLN3-225ENST00000566824 TRIM43Q96BQ3 446 aaPredicted RBP22.08■■□□□ 1.13
CLN3-225ENST00000566824 LTBP2Q14767 1821 aa22.08■■□□□ 1.12
CLN3-225ENST00000566824 H0YGN5 161 aa22.07■■□□□ 1.12
CLN3-225ENST00000566824 HSP90AA1P07900 732 aaKnown RBP22.07■■□□□ 1.12
CLN3-225ENST00000566824 ATP4AP20648 1035 aa22.07■■□□□ 1.12
CLN3-225ENST00000566824 SPIRE1Q08AE8 756 aa22.07■■□□□ 1.12
CLN3-225ENST00000566824 RESTQ13127 1097 aa22.07■■□□□ 1.12
CLN3-225ENST00000566824 CALCRLQ16602 461 aa22.07■■□□□ 1.12
CLN3-225ENST00000566824 UGCGQ16739 394 aa22.07■■□□□ 1.12
CLN3-225ENST00000566824 GLG1Q92896 1179 aa22.07■■□□□ 1.12
CLN3-225ENST00000566824 FAM20AQ96MK3 541 aa22.07■■□□□ 1.12
CLN3-225ENST00000566824 TOX2Q96NM4 488 aa22.07■■□□□ 1.12
CLN3-225ENST00000566824 DISC1Q9NRI5 854 aa22.07■■□□□ 1.12
CLN3-225ENST00000566824 NOL7Q9UMY1 257 aaKnown RBP22.07■■□□□ 1.12
CLN3-225ENST00000566824 TBX3O15119 743 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 STX6O43752 255 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 SMIM10L2AP0DMW4 78 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 SMIM10L2BP0DMW5 78 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 ITGB8P26012 769 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 TRAPPC10P48553 1259 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 PKP1Q13835 747 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 FAM173BQ6P4H8 233 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 KATNAL1Q9BW62 490 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 SMARCAD1Q9H4L7 1026 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 PRDM5Q9NQX1 630 aaPredicted RBP22.06■■□□□ 1.12
CLN3-225ENST00000566824 DCDC2CA8MYV0 355 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 WDR64B1ANS9 1081 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 BACH1O14867 736 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 CLTBP09497 229 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 CYP2C9P11712 490 aa22.06■■□□□ 1.12
CLN3-225ENST00000566824 TXKP42681 527 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms