RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 CHD7Q9P2D1 2997 aa20.99■□□□□ 0.95
CLN3-214ENST00000565140 ZBBXA8MT70 800 aa20.98■□□□□ 0.95
CLN3-214ENST00000565140 TREHO43280 583 aa20.98■□□□□ 0.95
CLN3-214ENST00000565140 ARHGAP4P98171 946 aa20.98■□□□□ 0.95
CLN3-214ENST00000565140 ZNF618Q5T7W0 954 aa20.98■□□□□ 0.95
CLN3-214ENST00000565140 CCDC12Q8WUD4 166 aaPredicted RBP20.98■□□□□ 0.95
CLN3-214ENST00000565140 SEPT1Q8WYJ6 367 aa20.98■□□□□ 0.95
CLN3-214ENST00000565140 ATP6V0A1Q93050 837 aa20.98■□□□□ 0.95
CLN3-214ENST00000565140 CDX2Q99626 313 aaPredicted RBP20.98■□□□□ 0.95
CLN3-214ENST00000565140 SETD4Q9NVD3 440 aa20.98■□□□□ 0.95
CLN3-214ENST00000565140 VPS54Q9P1Q0 977 aa20.98■□□□□ 0.95
CLN3-214ENST00000565140 SLC4A7Q9Y6M7 1214 aa20.98■□□□□ 0.95
CLN3-214ENST00000565140 WDR81Q562E7 1941 aa20.98■□□□□ 0.95
CLN3-214ENST00000565140 FAM86B1E9PN63 330 aa20.97■□□□□ 0.95
CLN3-214ENST00000565140 NBNO60934 754 aa20.97■□□□□ 0.95
CLN3-214ENST00000565140 SEC24BO95487 1268 aa20.97■□□□□ 0.95
CLN3-214ENST00000565140 FAM86B2P0C5J1 330 aa20.97■□□□□ 0.95
CLN3-214ENST00000565140 ITGB3BPQ13352 177 aaPredicted RBP20.97■□□□□ 0.95
CLN3-214ENST00000565140 REXO1Q8N1G1 1221 aaKnown RBP20.97■□□□□ 0.95
CLN3-214ENST00000565140 RASGRP4Q8TDF6 673 aa20.97■□□□□ 0.95
CLN3-214ENST00000565140 TIFAQ96CG3 184 aa20.97■□□□□ 0.95
CLN3-214ENST00000565140 AGO4Q9HCK5 861 aaKnown RBP20.97■□□□□ 0.95
CLN3-214ENST00000565140 ZNF215Q9UL58 517 aaPredicted RBP20.97■□□□□ 0.95
CLN3-214ENST00000565140 TMEM265A0A087WTH1 108 aa20.96■□□□□ 0.95
CLN3-214ENST00000565140 CYP3A4P08684 503 aa20.96■□□□□ 0.95
CLN3-214ENST00000565140 GNA11P29992 359 aa20.96■□□□□ 0.95
CLN3-214ENST00000565140 ZNF76P36508 570 aa20.96■□□□□ 0.95
CLN3-214ENST00000565140 RABGGTBP53611 331 aa20.96■□□□□ 0.95
CLN3-214ENST00000565140 ANAPC15P60006 121 aa20.96■□□□□ 0.95
CLN3-214ENST00000565140 ADAM17P78536 824 aa20.96■□□□□ 0.95
CLN3-214ENST00000565140 SSRP1Q08945 709 aaKnown RBP20.96■□□□□ 0.95
CLN3-214ENST00000565140 MBTPS1Q14703 1052 aa20.96■□□□□ 0.95
CLN3-214ENST00000565140 PCYT2Q99447 389 aa20.96■□□□□ 0.95
CLN3-214ENST00000565140 JPH1Q9HDC5 661 aaPredicted RBP20.96■□□□□ 0.95
CLN3-214ENST00000565140 SLC9A2Q9UBY0 812 aa20.96■□□□□ 0.95
CLN3-214ENST00000565140 A0A0C4DFX4 3053 aa20.96■□□□□ 0.95
CLN3-214ENST00000565140 NFASCO94856 1347 aa20.96■□□□□ 0.95
CLN3-214ENST00000565140 MYH9P35579 1960 aaKnown RBP20.96■□□□□ 0.95
CLN3-214ENST00000565140 IGLV3-22A0A075B6J6 115 aa20.95■□□□□ 0.94
CLN3-214ENST00000565140 CXCL10P02778 98 aa20.95■□□□□ 0.94
CLN3-214ENST00000565140 ACTN1P12814 892 aa20.95■□□□□ 0.94
CLN3-214ENST00000565140 THPOP40225 353 aa20.95■□□□□ 0.94
CLN3-214ENST00000565140 GRIN2CQ14957 1233 aa20.95■□□□□ 0.94
CLN3-214ENST00000565140 TCTN1Q2MV58 587 aa20.95■□□□□ 0.94
CLN3-214ENST00000565140 NIPA1Q7RTP0 329 aa20.95■□□□□ 0.94
CLN3-214ENST00000565140 TRIM22Q8IYM9 498 aa20.95■□□□□ 0.94
CLN3-214ENST00000565140 LMBR1Q8WVP7 490 aa20.95■□□□□ 0.94
CLN3-214ENST00000565140 UIMC1Q96RL1 719 aa20.95■□□□□ 0.94
CLN3-214ENST00000565140 ZNF576Q9H609 170 aa20.95■□□□□ 0.94
CLN3-214ENST00000565140 SH3GLB2Q9NR46 395 aa20.95■□□□□ 0.94
CLN3-214ENST00000565140 TPCN1Q9ULQ1 816 aa20.95■□□□□ 0.94
CLN3-214ENST00000565140 YBX2Q9Y2T7 364 aaKnown RBP20.95■□□□□ 0.94
CLN3-214ENST00000565140 TRANK1O15050 2925 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 PRUNE2Q8WUY3 3088 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 CPLX1O14810 134 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 EDIL3O43854 480 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 LGR5O75473 907 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 MYOGP15173 224 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 ATP2A2P16615 1042 aaKnown RBP20.94■□□□□ 0.94
CLN3-214ENST00000565140 MARK3P27448 753 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 SCRN1Q12765 414 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 MCTP2Q6DN12 878 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 PLA2G4DQ86XP0 818 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 CCDC148Q8NFR7 591 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 MYLIPQ8WY64 445 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 IL17RAQ96F46 866 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 SDF4Q9BRK5 362 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 ERAP1Q9NZ08 941 aa20.94■□□□□ 0.94
CLN3-214ENST00000565140 DTNBO60941 627 aa20.93■□□□□ 0.94
CLN3-214ENST00000565140 PARNO95453 639 aaKnown RBP20.93■□□□□ 0.94
CLN3-214ENST00000565140 GNAT1P11488 350 aa20.93■□□□□ 0.94
CLN3-214ENST00000565140 ACTR2P61160 394 aa20.93■□□□□ 0.94
CLN3-214ENST00000565140 RAB30Q15771 203 aa20.93■□□□□ 0.94
CLN3-214ENST00000565140 BICD2Q8TD16 824 aa20.93■□□□□ 0.94
CLN3-214ENST00000565140 GLG1Q92896 1179 aa20.93■□□□□ 0.94
CLN3-214ENST00000565140 AIFM3Q96NN9 605 aa20.93■□□□□ 0.94
CLN3-214ENST00000565140 NKX2-4Q9H2Z4 354 aa20.93■□□□□ 0.94
CLN3-214ENST00000565140 SMARCAD1Q9H4L7 1026 aa20.93■□□□□ 0.94
CLN3-214ENST00000565140 MSRAQ9UJ68 235 aa20.93■□□□□ 0.94
CLN3-214ENST00000565140 MICAL3Q7RTP6 2002 aa20.93■□□□□ 0.94
CLN3-214ENST00000565140 UNC80Q8N2C7 3258 aa20.93■□□□□ 0.94
CLN3-214ENST00000565140 SIP14410 1827 aa20.92■□□□□ 0.94
CLN3-214ENST00000565140 LOXHD1Q8IVV2 1947 aa20.92■□□□□ 0.94
CLN3-214ENST00000565140 RSPH10B2B2RC85 870 aa20.92■□□□□ 0.94
CLN3-214ENST00000565140 DDX39AO00148 427 aaKnown RBP20.92■□□□□ 0.94
CLN3-214ENST00000565140 DHX15O43143 795 aaKnown RBP20.92■□□□□ 0.94
CLN3-214ENST00000565140 DEXIO95424 95 aa20.92■□□□□ 0.94
CLN3-214ENST00000565140 RSPH10BP0C881 870 aa20.92■□□□□ 0.94
CLN3-214ENST00000565140 AK2P54819 239 aa20.92■□□□□ 0.94
CLN3-214ENST00000565140 NLRP5P59047 1200 aa20.92■□□□□ 0.94
CLN3-214ENST00000565140 OSBPL7Q9BZF2 842 aa20.92■□□□□ 0.94
CLN3-214ENST00000565140 EMSYQ7Z589 1322 aa20.92■□□□□ 0.94
CLN3-214ENST00000565140 NRCAMQ92823 1304 aa20.92■□□□□ 0.94
CLN3-214ENST00000565140 PFKFB2O60825 505 aa20.91■□□□□ 0.94
CLN3-214ENST00000565140 BAIAP3O94812 1187 aa20.91■□□□□ 0.94
CLN3-214ENST00000565140 ATG7O95352 703 aa20.91■□□□□ 0.94
CLN3-214ENST00000565140 CCNE2O96020 404 aa20.91■□□□□ 0.94
CLN3-214ENST00000565140 PPFIA1Q13136 1202 aa20.91■□□□□ 0.94
CLN3-214ENST00000565140 MARCH8Q5T0T0 291 aa20.91■□□□□ 0.94
CLN3-214ENST00000565140 CNKSR3Q6P9H4 555 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms