RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 SMARCAD1Q9H4L7 1026 aa15.22■□□□□ 0.03
CLK3-213ENST00000563842 AZI2Q9H6S1 392 aa15.22■□□□□ 0.03
CLK3-213ENST00000563842 TBC1D22BQ9NU19 505 aa15.22■□□□□ 0.03
CLK3-213ENST00000563842 ERAP1Q9NZ08 941 aa15.22■□□□□ 0.03
CLK3-213ENST00000563842 UMODL1Q5DID0 1318 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 GSTTP1A0A1W2PQM5 241 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 FAM86B1E9PN63 330 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 FGBP02675 491 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 FAM86B2P0C5J1 330 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 EPHB4P54760 987 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 RBL2Q08999 1139 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 C9orf50Q5SZB4 431 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 KRT25Q7Z3Z0 450 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 NECAB1Q8N987 351 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 AFAP1L1Q8TED9 768 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 GLG1Q92896 1179 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.21■□□□□ 0.034e-8■■■■□ 20.6
CLK3-213ENST00000563842 ZNF577Q9BSK1 485 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 PHF20Q9BVI0 1012 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 WNT8AQ9H1J5 351 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 BRMS1Q9HCU9 246 aa15.21■□□□□ 0.03
CLK3-213ENST00000563842 TET1Q8NFU7 2136 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 EMSYQ7Z589 1322 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 COL6A3P12111 3177 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 IGLV3-22A0A075B6J6 115 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 IPO5O00410 1097 aaKnown RBP15.2■□□□□ 0.02
CLK3-213ENST00000563842 CTDNEP1O95476 244 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 IQCF3P0C7M6 154 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 SMIM10L2AP0DMW4 78 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 SMIM10L2BP0DMW5 78 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 ACTR2P61160 394 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 TRIM29Q14134 588 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 NONOQ15233 471 aaKnown RBP eCLIP15.2■□□□□ 0.02
CLK3-213ENST00000563842 RABEP1Q15276 862 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 PRR16Q569H4 304 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 TMEM240Q5SV17 173 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 TBCKQ8TEA7 893 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 ATP6V0A1Q93050 837 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 AIFM3Q96NN9 605 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 RNPEPQ9H4A4 650 aa15.2■□□□□ 0.02
CLK3-213ENST00000563842 SH2B1Q9NRF2 756 aaPredicted RBP15.2■□□□□ 0.02
CLK3-213ENST00000563842 NRCAMQ92823 1304 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 CCDC194A0A1B0GVG4 234 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 M0R2N6 131 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 ADAMTS3O15072 1205 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 ST18O60284 1047 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 LGR5O75473 907 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 LARGE1O95461 756 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 ACTN1P12814 892 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 SELPP16109 830 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 HOXC8P31273 242 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 SLC26A2P50443 739 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 SMAD3P84022 425 aaKnown RBP15.19■□□□□ 0.02
CLK3-213ENST00000563842 ITGB3BPQ13352 177 aaPredicted RBP15.19■□□□□ 0.02
CLK3-213ENST00000563842 MOXD1Q6UVY6 613 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 ZNF365Q70YC5 407 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 PLPPR4Q7Z2D5 763 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 TRIM50Q86XT4 487 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 NSUN7Q8NE18 718 aaKnown RBP15.19■□□□□ 0.02
CLK3-213ENST00000563842 SCLYQ96I15 445 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 NAP1L4Q99733 375 aaKnown RBP15.19■□□□□ 0.02
CLK3-213ENST00000563842 LLPHQ9BRT6 129 aaKnown RBP15.19■□□□□ 0.02
CLK3-213ENST00000563842 KCNJ14Q9UNX9 436 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 MYO9BQ13459 2157 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 EVPLQ92817 2033 aa15.19■□□□□ 0.02
CLK3-213ENST00000563842 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.18■□□□□ 0.02
CLK3-213ENST00000563842 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.18■□□□□ 0.02
CLK3-213ENST00000563842 SOX1O00570 391 aaPredicted RBP15.18■□□□□ 0.02
CLK3-213ENST00000563842 CAND2O75155 1236 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 ATG7O95352 703 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 ACRP10323 421 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 CKBP12277 381 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 STAT5BP51692 787 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 KRT76Q01546 638 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 NPY5RQ15761 445 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 FAM160B1Q5W0V3 765 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 ZNF746Q6NUN9 644 aaPredicted RBP15.18■□□□□ 0.02
CLK3-213ENST00000563842 MIS18BP1Q6P0N0 1132 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 LRRC8DQ7L1W4 858 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 C16orf59Q7L2K0 433 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 SERINC5Q86VE9 423 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 HERVK_113Q902F9 699 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 LRCH3Q96II8 777 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 CTAGE1Q96RT6 745 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 KIF2CQ99661 725 aa15.18■□□□□ 0.02
CLK3-213ENST00000563842 CYP3A7-CYP3A51PA0A087WV96 503 aa15.17■□□□□ 0.02
CLK3-213ENST00000563842 RRN3P2A6NIE6 340 aa15.17■□□□□ 0.02
CLK3-213ENST00000563842 DDX39AO00148 427 aaKnown RBP15.17■□□□□ 0.02
CLK3-213ENST00000563842 RPLP2P05387 115 aaKnown RBP15.17■□□□□ 0.02
CLK3-213ENST00000563842 FDPSP14324 419 aaKnown RBP15.17■□□□□ 0.02
CLK3-213ENST00000563842 CYP3A7P24462 503 aa15.17■□□□□ 0.02
CLK3-213ENST00000563842 KRT2P35908 639 aa15.17■□□□□ 0.02
CLK3-213ENST00000563842 ZNF200P98182 395 aaPredicted RBP15.17■□□□□ 0.02
CLK3-213ENST00000563842 Q4G0T1 1027 aa15.17■□□□□ 0.02
CLK3-213ENST00000563842 DEFB128Q7Z7B8 93 aa15.17■□□□□ 0.02
CLK3-213ENST00000563842 SMAP1Q8IYB5 467 aaPredicted RBP15.17■□□□□ 0.02
CLK3-213ENST00000563842 DHX38Q92620 1227 aaKnown RBP15.17■□□□□ 0.02
CLK3-213ENST00000563842 RIT2Q99578 217 aa15.17■□□□□ 0.02
CLK3-213ENST00000563842 FTOQ9C0B1 505 aaKnown RBP eCLIP15.17■□□□□ 0.02
CLK3-213ENST00000563842 SETD4Q9NVD3 440 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms