RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 MIER3Q7Z3K6 550 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 DPP9Q86TI2 863 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 FBXO16Q8IX29 292 aaPredicted RBP15.21■□□□□ 0.03
VPS39-206ENST00000562662 SPATA20Q8TB22 786 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 LARP4BQ92615 738 aaKnown RBP15.21■□□□□ 0.03
VPS39-206ENST00000562662 RAD54LQ92698 747 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 STAMQ92783 540 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 DYDC2Q96IM9 177 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 SENP7Q9BQF6 1050 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 TSPY26PQ9H489 355 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 BCAS3Q9H6U6 928 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 TUFT1Q9NNX1 390 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 RGL1Q9NZL6 768 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 KIAA1024Q9UPX6 916 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 PCDHA5Q9Y5H7 936 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 POTEFA5A3E0 1075 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 SLITRK3O94933 977 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 ARIH2O95376 493 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 HOXC6P09630 235 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 CCDC192P0DO97 292 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 TGFB3P10600 412 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 MUTP22033 750 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 UBA1P22314 1058 aaKnown RBP15.2■□□□□ 0.02
VPS39-206ENST00000562662 CASP1P29466 404 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 SARSP49591 514 aaKnown RBP15.2■□□□□ 0.02
VPS39-206ENST00000562662 JAK3P52333 1124 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 CYP4A11Q02928 519 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 CUL4BQ13620 913 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 MCM6Q14566 821 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 POTEGQ6S5H5 508 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 SASS6Q6UVJ0 657 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 RDM1Q8NG50 284 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 NEK9Q8TD19 979 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 KATNBL1Q9H079 304 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 GJD2Q9UKL4 321 aa15.2■□□□□ 0.02
VPS39-206ENST00000562662 SYNGAP1Q96PV0 1343 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 MYH11P35749 1972 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 A0A087WWV3 80 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 WDR64B1ANS9 1081 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 E9PMD0 336 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 ECM2O94769 699 aaPredicted RBP15.19■□□□□ 0.02
VPS39-206ENST00000562662 SNAI1O95863 264 aaPredicted RBP15.19■□□□□ 0.02
VPS39-206ENST00000562662 SFNP31947 248 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 CTTNQ14247 550 aaKnown RBP15.19■□□□□ 0.02
VPS39-206ENST00000562662 KCNV1Q6PIU1 500 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 KCTD17Q8N5Z5 321 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 BLZF1Q9H2G9 400 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 JPH1Q9HDC5 661 aaPredicted RBP15.19■□□□□ 0.02
VPS39-206ENST00000562662 VTA1Q9NP79 307 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.19■□□□□ 0.02
VPS39-206ENST00000562662 SLC5A4Q9NY91 659 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 WRAP73Q9P2S5 460 aaPredicted RBP15.19■□□□□ 0.02
VPS39-206ENST00000562662 SLC9A2Q9UBY0 812 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 TCEAL9Q9UHQ7 104 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 DDX41Q9UJV9 622 aaKnown RBP15.19■□□□□ 0.02
VPS39-206ENST00000562662 TELO2Q9Y4R8 837 aa15.19■□□□□ 0.02
VPS39-206ENST00000562662 RBM47A0AV96 593 aaKnown RBP15.18■□□□□ 0.02
VPS39-206ENST00000562662 FSD2A1L4K1 749 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 TNPO2O14787 897 aaKnown RBP15.18■□□□□ 0.02
VPS39-206ENST00000562662 TBC1D8O95759 1140 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 MYL1P05976 194 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 P4HBP07237 508 aaKnown RBP15.18■□□□□ 0.02
VPS39-206ENST00000562662 PSMC6P62333 389 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 LACTBP83111 547 aaPredicted RBP15.18■□□□□ 0.02
VPS39-206ENST00000562662 STX1AQ16623 288 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 TAPT1Q6NXT6 567 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 CCDC62Q6P9F0 684 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 SV2BQ7L1I2 683 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 CYFIP1Q7L576 1253 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 SMAP1Q8IYB5 467 aaPredicted RBP15.18■□□□□ 0.02
VPS39-206ENST00000562662 MSL3Q8N5Y2 521 aaKnown RBP15.18■□□□□ 0.02
VPS39-206ENST00000562662 GIMAP8Q8ND71 665 aaPredicted RBP15.18■□□□□ 0.02
VPS39-206ENST00000562662 BANK1Q8NDB2 785 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 SOCS4Q8WXH5 440 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 SMARCE1Q969G3 411 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 C7orf25Q9BPX7 421 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 LXNQ9BS40 222 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 TINF2Q9BSI4 451 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 ARHGAP39Q9C0H5 1083 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 PDGFCQ9NRA1 345 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 RNF186Q9NXI6 227 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 MAN1B1Q9UKM7 699 aa15.18■□□□□ 0.02
VPS39-206ENST00000562662 MYMKA6NI61 221 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 BIN1O00499 593 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 KLRC4O43908 158 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 FARP2O94887 1054 aaPredicted RBP15.17■□□□□ 0.02
VPS39-206ENST00000562662 SMC2O95347 1197 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 ATG7O95352 703 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 IGHA2P01877 340 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 PLA2G4BP0C869 781 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 RGS2P41220 211 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 SLC12A3P55017 1021 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 FCGRTP55899 365 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 NLRP12P59046 1061 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 ACTR2P61160 394 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 NEDD9Q14511 834 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 LY6KQ17RY6 165 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 TPH2Q8IWU9 490 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 TRIM47Q96LD4 638 aa15.17■□□□□ 0.02
VPS39-206ENST00000562662 TRIM9Q9C026 710 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms