RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 TCF7P36402 384 aaPredicted RBP11.78□□□□□ -0.52
CLK3-205ENST00000561673 ADCY7P51828 1080 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 WDR5P61964 334 aaKnown RBP11.78□□□□□ -0.52
CLK3-205ENST00000561673 PPP1R18Q6NYC8 613 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 CNKSR3Q6P9H4 555 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 BLOC1S2Q6QNY1 142 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 PLCD3Q8N3E9 789 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 FBXL16Q8N461 479 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 USP38Q8NB14 1042 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 SEPT1Q8WYJ6 367 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 BRF1Q92994 677 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 PGBD1Q96JS3 809 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 EHMT1Q9H9B1 1298 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 PKD2L1Q9P0L9 805 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 ZNF215Q9UL58 517 aaPredicted RBP11.78□□□□□ -0.52
CLK3-205ENST00000561673 CCDC196A0A1B0GTZ2 297 aa11.77□□□□□ -0.53
CLK3-205ENST00000561673 RSPH10B2B2RC85 870 aa11.77□□□□□ -0.53
CLK3-205ENST00000561673 hCG_1984214I3L0E3 225 aa11.77□□□□□ -0.53
CLK3-205ENST00000561673 FOSP01100 380 aaPredicted RBP11.77□□□□□ -0.53
CLK3-205ENST00000561673 RSPH10BP0C881 870 aa11.77□□□□□ -0.53
CLK3-205ENST00000561673 GNAT1P11488 350 aa11.77□□□□□ -0.53
CLK3-205ENST00000561673 IGFBP4P22692 258 aa11.77□□□□□ -0.53
CLK3-205ENST00000561673 KCNJ6P48051 423 aa11.77□□□□□ -0.53
CLK3-205ENST00000561673 CLK2P49760 499 aaKnown RBP11.77□□□□□ -0.53
CLK3-205ENST00000561673 ADAM17P78536 824 aa11.77□□□□□ -0.53
CLK3-205ENST00000561673 PFKFB3Q16875 520 aaPredicted RBP11.77□□□□□ -0.53
CLK3-205ENST00000561673 TMCO2Q7Z6W1 182 aaPredicted RBP11.77□□□□□ -0.53
CLK3-205ENST00000561673 TEX2Q8IWB9 1127 aa11.77□□□□□ -0.53
CLK3-205ENST00000561673 ZNF713Q8N859 430 aaPredicted RBP11.77□□□□□ -0.53
CLK3-205ENST00000561673 MXRA8Q9BRK3 442 aa11.77□□□□□ -0.53
CLK3-205ENST00000561673 AGXT2Q9BYV1 514 aa11.77□□□□□ -0.53
CLK3-205ENST00000561673 KCNH7Q9NS40 1196 aa11.77□□□□□ -0.53
CLK3-205ENST00000561673 TMEM260Q9NX78 707 aa11.77□□□□□ -0.53
CLK3-205ENST00000561673 MUC3AQ02505 3323 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 ABHD14A-ACY1A0A1B0GW23 586 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 KIF28PB7ZC32 967 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 ADAMTS3O15072 1205 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 TLL1O43897 1013 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 LGR5O75473 907 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 ARHGEF15O94989 841 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 NEFLP07196 543 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 ARP10275 920 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 SCG2P13521 617 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 PSMA5P28066 241 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 DEFB103AP81534 67 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 ARHGAP4P98171 946 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 IKBKEQ14164 716 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 CEP55Q53EZ4 464 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 LMBR1Q8WVP7 490 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 PPM1EQ8WY54 764 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 ANO3Q9BYT9 981 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 OSBPL7Q9BZF2 842 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 GLT8D2Q9H1C3 349 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 CERS4Q9HA82 394 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 EMSYQ7Z589 1322 aa11.76□□□□□ -0.53
CLK3-205ENST00000561673 TRIP12Q14669 1992 aaPredicted RBP11.76□□□□□ -0.53
CLK3-205ENST00000561673 TET1Q8NFU7 2136 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 TANC1Q9C0D5 1861 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 EPOPA6NHQ4 379 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 RFXAPO00287 272 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 MEIS1O00470 390 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 PRPF3O43395 683 aaKnown RBP11.75□□□□□ -0.53
CLK3-205ENST00000561673 CAND2O75155 1236 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 CTSHP09668 335 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 MARK3P27448 753 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 SREBF1P36956 1147 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 TAP1Q03518 808 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 AP3B2Q13367 1082 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 CCDC85BQ15834 202 aaPredicted RBP11.75□□□□□ -0.53
CLK3-205ENST00000561673 PKN1Q16512 942 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 PLEKHG4Q58EX7 1191 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 JAKMIP3Q5VZ66 844 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 DBF4BQ8NFT6 615 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 GLG1Q92896 1179 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 PHKBQ93100 1093 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 ZBED2Q9BTP6 218 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 COL25A1Q9BXS0 654 aaPredicted RBP11.75□□□□□ -0.53
CLK3-205ENST00000561673 SMARCAD1Q9H4L7 1026 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 AGO4Q9HCK5 861 aaKnown RBP11.75□□□□□ -0.53
CLK3-205ENST00000561673 JPH1Q9HDC5 661 aaPredicted RBP11.75□□□□□ -0.53
CLK3-205ENST00000561673 ERAP1Q9NZ08 941 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 SLC9A2Q9UBY0 812 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 NRCAMQ92823 1304 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 NID2Q14112 1375 aa11.75□□□□□ -0.53
CLK3-205ENST00000561673 LCHNA4D1U4 455 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 EPB41L2O43491 1005 aaKnown RBP11.74□□□□□ -0.53
CLK3-205ENST00000561673 EFCAB14O75071 495 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 PPFIA3O75145 1194 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 PDIA3P30101 505 aaKnown RBP11.74□□□□□ -0.53
CLK3-205ENST00000561673 EVCP57679 992 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 CCT2P78371 535 aaKnown RBP11.74□□□□□ -0.53
CLK3-205ENST00000561673 PPFIA1Q13136 1202 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 ITGB3BPQ13352 177 aaPredicted RBP11.74□□□□□ -0.53
CLK3-205ENST00000561673 GRIK4Q16099 956 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 NTRK3Q16288 839 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 MARCH8Q5T0T0 291 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.74□□□□□ -0.53
CLK3-205ENST00000561673 RUFY4Q6ZNE9 571 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 RUFY3Q7L099 469 aa11.74□□□□□ -0.53
CLK3-205ENST00000561673 SPRED2Q7Z698 418 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms