RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ZNF215Q9UL58 517 aaPredicted RBP18.96■□□□□ 0.63
CLN3-208ENST00000561505 MBLAC1A4D2B0 266 aaPredicted RBP18.95■□□□□ 0.62
CLN3-208ENST00000561505 CHRNA1P02708 482 aa18.95■□□□□ 0.62
CLN3-208ENST00000561505 KCNA5P22460 613 aa18.95■□□□□ 0.62
CLN3-208ENST00000561505 MGAT3Q09327 533 aa18.95■□□□□ 0.62
CLN3-208ENST00000561505 GPM6BQ13491 265 aa18.95■□□□□ 0.62
CLN3-208ENST00000561505 USP17L6PQ6QN14 398 aa18.95■□□□□ 0.62
CLN3-208ENST00000561505 RALYLQ86SE5 291 aaKnown RBP18.95■□□□□ 0.62
CLN3-208ENST00000561505 TRIM50Q86XT4 487 aa18.95■□□□□ 0.62
CLN3-208ENST00000561505 GPRASP2Q96D09 838 aa18.95■□□□□ 0.62
CLN3-208ENST00000561505 LZTS2Q9BRK4 669 aa18.95■□□□□ 0.62
CLN3-208ENST00000561505 LY9Q9HBG7 655 aa18.95■□□□□ 0.62
CLN3-208ENST00000561505 POTEB3A0JP26 581 aa18.94■□□□□ 0.62
CLN3-208ENST00000561505 DDAH1O94760 285 aa18.94■□□□□ 0.62
CLN3-208ENST00000561505 RB1P06400 928 aa18.94■□□□□ 0.62
CLN3-208ENST00000561505 IL9P15248 144 aa18.94■□□□□ 0.62
CLN3-208ENST00000561505 KCNA2P16389 499 aa18.94■□□□□ 0.62
CLN3-208ENST00000561505 CTC1Q2NKJ3 1217 aa18.94■□□□□ 0.62
CLN3-208ENST00000561505 PTCRAQ6ISU1 281 aaPredicted RBP18.94■□□□□ 0.62
CLN3-208ENST00000561505 TAF2Q6P1X5 1199 aa18.94■□□□□ 0.62
CLN3-208ENST00000561505 POTEBQ6S5H4 581 aa18.94■□□□□ 0.62
CLN3-208ENST00000561505 CRIPAKQ8N1N5 446 aa18.94■□□□□ 0.62
CLN3-208ENST00000561505 BANK1Q8NDB2 785 aa18.94■□□□□ 0.62
CLN3-208ENST00000561505 CLP1Q92989 425 aaKnown RBP18.94■□□□□ 0.62
CLN3-208ENST00000561505 YME1L1Q96TA2 773 aa18.94■□□□□ 0.62
CLN3-208ENST00000561505 IFIH1Q9BYX4 1025 aaKnown RBP18.94■□□□□ 0.62
CLN3-208ENST00000561505 RALGAPA2Q2PPJ7 1873 aa18.93■□□□□ 0.62
CLN3-208ENST00000561505 GSTTP1A0A1W2PQM5 241 aa18.93■□□□□ 0.62
CLN3-208ENST00000561505 C19orf67A6NJJ6 358 aa18.93■□□□□ 0.62
CLN3-208ENST00000561505 ATP9AO75110 1047 aa18.93■□□□□ 0.62
CLN3-208ENST00000561505 CTSHP09668 335 aa18.93■□□□□ 0.62
CLN3-208ENST00000561505 NLRX1Q86UT6 975 aa18.93■□□□□ 0.62
CLN3-208ENST00000561505 ZNF654Q8IZM8 581 aa18.93■□□□□ 0.62
CLN3-208ENST00000561505 ZNF689Q96CS4 500 aaPredicted RBP18.93■□□□□ 0.62
CLN3-208ENST00000561505 RRP36Q96EU6 259 aaKnown RBP18.93■□□□□ 0.62
CLN3-208ENST00000561505 LMAN2LQ9H0V9 348 aa18.93■□□□□ 0.62
CLN3-208ENST00000561505 UBIAD1Q9Y5Z9 338 aa18.93■□□□□ 0.62
CLN3-208ENST00000561505 PRR33A8MZF0 331 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 MAFGO15525 162 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 ITGB5P18084 799 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 KIF5BP33176 963 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 BMPR1AP36894 532 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 LTBRP36941 435 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 ARHGAP4P98171 946 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 LPIN1Q14693 890 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 TCEAL5Q5H9L2 206 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 MARCH8Q5T0T0 291 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 TMTC2Q8N394 836 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 SEPT1Q8WYJ6 367 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 IL17RAQ96F46 866 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 CDHR1Q96JP9 859 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 NSUN3Q9H649 340 aaKnown RBP18.92■□□□□ 0.62
CLN3-208ENST00000561505 PRKAG3Q9UGI9 489 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 HCN4Q9Y3Q4 1203 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 SQORQ9Y6N5 450 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 DOCK5Q9H7D0 1870 aa18.92■□□□□ 0.62
CLN3-208ENST00000561505 ENPP3O14638 875 aa18.91■□□□□ 0.62
CLN3-208ENST00000561505 NCK2O43639 380 aa18.91■□□□□ 0.62
CLN3-208ENST00000561505 TCF7P36402 384 aaPredicted RBP18.91■□□□□ 0.62
CLN3-208ENST00000561505 GNAQP50148 359 aa18.91■□□□□ 0.62
CLN3-208ENST00000561505 RUFY4Q6ZNE9 571 aa18.91■□□□□ 0.62
CLN3-208ENST00000561505 TEX2Q8IWB9 1127 aa18.91■□□□□ 0.62
CLN3-208ENST00000561505 SRBD1Q8N5C6 995 aaKnown RBP18.91■□□□□ 0.62
CLN3-208ENST00000561505 SMARCC2Q8TAQ2 1214 aa18.91■□□□□ 0.62
CLN3-208ENST00000561505 CUL5Q93034 780 aa18.91■□□□□ 0.62
CLN3-208ENST00000561505 NLRC5Q86WI3 1866 aa18.9■□□□□ 0.62
CLN3-208ENST00000561505 TTC3P53804 2025 aa18.9■□□□□ 0.62
CLN3-208ENST00000561505 UPP2O95045 317 aa18.9■□□□□ 0.62
CLN3-208ENST00000561505 RPLP2P05387 115 aaKnown RBP18.9■□□□□ 0.62
CLN3-208ENST00000561505 LIFRP42702 1097 aa18.9■□□□□ 0.62
CLN3-208ENST00000561505 FBXO47Q5MNV8 452 aa18.9■□□□□ 0.62
CLN3-208ENST00000561505 UTP14CQ5TAP6 766 aaKnown RBP18.9■□□□□ 0.62
CLN3-208ENST00000561505 FIBCD1Q8N539 461 aa18.9■□□□□ 0.62
CLN3-208ENST00000561505 CTCFLQ8NI51 663 aaPredicted RBP18.9■□□□□ 0.62
CLN3-208ENST00000561505 ERAP1Q9NZ08 941 aa18.9■□□□□ 0.62
CLN3-208ENST00000561505 RWDD3Q9Y3V2 267 aa18.9■□□□□ 0.62
CLN3-208ENST00000561505 SUPT16HQ9Y5B9 1047 aaKnown RBP18.9■□□□□ 0.62
CLN3-208ENST00000561505 PIEZO1Q92508 2521 aa18.9■□□□□ 0.62
CLN3-208ENST00000561505 PLEKHA8P1O95397 391 aa18.89■□□□□ 0.61
CLN3-208ENST00000561505 ALADP13716 330 aa18.89■□□□□ 0.61
CLN3-208ENST00000561505 FAM43BQ6ZT52 329 aaPredicted RBP18.89■□□□□ 0.61
CLN3-208ENST00000561505 TMEM87BQ96K49 555 aa18.89■□□□□ 0.61
CLN3-208ENST00000561505 PCYT2Q99447 389 aa18.89■□□□□ 0.61
CLN3-208ENST00000561505 PSTPIP2Q9H939 334 aa18.89■□□□□ 0.61
CLN3-208ENST00000561505 RBM8AQ9Y5S9 174 aaKnown RBP18.89■□□□□ 0.61
CLN3-208ENST00000561505 ADGRA3Q8IWK6 1321 aa18.89■□□□□ 0.61
CLN3-208ENST00000561505 H3BQ06 376 aaPredicted RBP18.88■□□□□ 0.61
CLN3-208ENST00000561505 SH2B2O14492 632 aaPredicted RBP18.88■□□□□ 0.61
CLN3-208ENST00000561505 DGKIO75912 1065 aa18.88■□□□□ 0.61
CLN3-208ENST00000561505 GHRP10912 638 aa18.88■□□□□ 0.61
CLN3-208ENST00000561505 ZP2Q05996 745 aa18.88■□□□□ 0.61
CLN3-208ENST00000561505 PPFIA1Q13136 1202 aa18.88■□□□□ 0.61
CLN3-208ENST00000561505 COL9A3Q14050 684 aaPredicted RBP18.88■□□□□ 0.61
CLN3-208ENST00000561505 GRIK4Q16099 956 aa18.88■□□□□ 0.61
CLN3-208ENST00000561505 C11orf84Q9BUA3 381 aaPredicted RBP18.88■□□□□ 0.61
CLN3-208ENST00000561505 MYL10Q9BUA6 226 aa18.88■□□□□ 0.61
CLN3-208ENST00000561505 PLVAPQ9BX97 442 aa18.88■□□□□ 0.61
CLN3-208ENST00000561505 SMARCAD1Q9H4L7 1026 aa18.88■□□□□ 0.61
CLN3-208ENST00000561505 JADE2Q9NQC1 790 aa18.88■□□□□ 0.61
CLN3-208ENST00000561505 TUBE1Q9UJT0 475 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms