RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 ADAM17P78536 824 aa10.55□□□□□ -0.72
HDDC3-204ENST00000559834 SP4Q02446 784 aa10.55□□□□□ -0.72
HDDC3-204ENST00000559834 SEMA3FQ13275 785 aa10.55□□□□□ -0.72
HDDC3-204ENST00000559834 PTCRAQ6ISU1 281 aaPredicted RBP10.55□□□□□ -0.72
HDDC3-204ENST00000559834 USP17L6PQ6QN14 398 aa10.55□□□□□ -0.72
HDDC3-204ENST00000559834 NFXL1Q6ZNB6 911 aa10.55□□□□□ -0.72
HDDC3-204ENST00000559834 FAM178BQ8IXR5 827 aa10.55□□□□□ -0.72
HDDC3-204ENST00000559834 ZNF654Q8IZM8 581 aa10.55□□□□□ -0.72
HDDC3-204ENST00000559834 FIBCD1Q8N539 461 aa10.55□□□□□ -0.72
HDDC3-204ENST00000559834 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.55□□□□□ -0.72
HDDC3-204ENST00000559834 MAP4K1Q92918 833 aa10.55□□□□□ -0.72
HDDC3-204ENST00000559834 TNPO1Q92973 898 aaKnown RBP10.55□□□□□ -0.72
HDDC3-204ENST00000559834 GPRASP2Q96D09 838 aa10.55□□□□□ -0.72
HDDC3-204ENST00000559834 YTHDC1Q96MU7 727 aaKnown RBP10.55□□□□□ -0.72
HDDC3-204ENST00000559834 PSTPIP2Q9H939 334 aa10.55□□□□□ -0.72
HDDC3-204ENST00000559834 RWDD3Q9Y3V2 267 aa10.55□□□□□ -0.72
HDDC3-204ENST00000559834 CHD9Q3L8U1 2897 aa10.55□□□□□ -0.72
HDDC3-204ENST00000559834 GRXCR2A6NFK2 248 aa10.54□□□□□ -0.72
HDDC3-204ENST00000559834 CCDC69A6NI79 296 aa10.54□□□□□ -0.72
HDDC3-204ENST00000559834 MEIS2O14770 477 aa10.54□□□□□ -0.72
HDDC3-204ENST00000559834 PDE4AP27815 886 aa10.54□□□□□ -0.72
HDDC3-204ENST00000559834 MCM5P33992 734 aa10.54□□□□□ -0.72
HDDC3-204ENST00000559834 TCF7P36402 384 aaPredicted RBP10.54□□□□□ -0.72
HDDC3-204ENST00000559834 EP400NLQ6ZTU2 488 aa10.54□□□□□ -0.72
HDDC3-204ENST00000559834 TRIM50Q86XT4 487 aa10.54□□□□□ -0.72
HDDC3-204ENST00000559834 MB21D2Q8IYB1 491 aaPredicted RBP10.54□□□□□ -0.72
HDDC3-204ENST00000559834 LMBR1Q8WVP7 490 aa10.54□□□□□ -0.72
HDDC3-204ENST00000559834 GLG1Q92896 1179 aa10.54□□□□□ -0.72
HDDC3-204ENST00000559834 TMEM87BQ96K49 555 aa10.54□□□□□ -0.72
HDDC3-204ENST00000559834 SMARCAD1Q9H4L7 1026 aa10.54□□□□□ -0.72
HDDC3-204ENST00000559834 NSUN3Q9H649 340 aaKnown RBP10.54□□□□□ -0.72
HDDC3-204ENST00000559834 ERAP1Q9NZ08 941 aa10.54□□□□□ -0.72
HDDC3-204ENST00000559834 RRN3P2A6NIE6 340 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 SPDYE3A6NKU9 549 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 ENPP3O14638 875 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 CHRNA1P02708 482 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 BMPR1AP36894 532 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 ANTXR2P58335 489 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 PPFIA1Q13136 1202 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 MTMR1Q13613 665 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 TCEAL5Q5H9L2 206 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 NEK9Q8TD19 979 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 PABPC5Q96DU9 382 aaKnown RBP10.53□□□□□ -0.72
HDDC3-204ENST00000559834 C11orf84Q9BUA3 381 aaPredicted RBP10.53□□□□□ -0.72
HDDC3-204ENST00000559834 LMAN2LQ9H0V9 348 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 EHMT1Q9H9B1 1298 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 LY9Q9HBG7 655 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 CD320Q9NPF0 282 aa10.53□□□□□ -0.72
HDDC3-204ENST00000559834 RBM8AQ9Y5S9 174 aaKnown RBP10.53□□□□□ -0.72
HDDC3-204ENST00000559834 PTPRSQ13332 1948 aa10.52□□□□□ -0.72
HDDC3-204ENST00000559834 GSTTP1A0A1W2PQM5 241 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 PRR33A8MZF0 331 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 C5orf67F2Z3F1 127 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 H3BQ06 376 aaPredicted RBP10.52□□□□□ -0.73
HDDC3-204ENST00000559834 PRC1O43663 620 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 ATP9AO75110 1047 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 GHRP10912 638 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 IL9P15248 144 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 KCNA2P16389 499 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 CTNNB1P35222 781 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 LIFRP42702 1097 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 GRIK4Q16099 956 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 IER5Q5VY09 327 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 SYNE3Q6ZMZ3 975 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 SRBD1Q8N5C6 995 aaKnown RBP10.52□□□□□ -0.73
HDDC3-204ENST00000559834 DNAJB3Q8WWF6 145 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 KHSRPQ92945 711 aaKnown RBP eCLIP10.52□□□□□ -0.73
HDDC3-204ENST00000559834 MYL10Q9BUA6 226 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 OSBPL7Q9BZF2 842 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 UPF3BQ9BZI7 483 aaKnown RBP10.52□□□□□ -0.73
HDDC3-204ENST00000559834 AZI2Q9H6S1 392 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 PRKAG3Q9UGI9 489 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 TUBE1Q9UJT0 475 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 UBIAD1Q9Y5Z9 338 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 SLC12A7Q9Y666 1083 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 TAF6LQ9Y6J9 622 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 CHD7Q9P2D1 2997 aa10.52□□□□□ -0.73
HDDC3-204ENST00000559834 MICAL3Q7RTP6 2002 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 BRWD1Q9NSI6 2320 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 MBLAC1A4D2B0 266 aaPredicted RBP10.51□□□□□ -0.73
HDDC3-204ENST00000559834 M0QZ92 97 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 ITGB5P18084 799 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 MARK3P27448 753 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 BTG3Q14201 252 aaPredicted RBP10.51□□□□□ -0.73
HDDC3-204ENST00000559834 LPIN1Q14693 890 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 CSPP1Q1MSJ5 1256 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 RUFY4Q6ZNE9 571 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 TSHZ1Q6ZSZ6 1077 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 FAM43BQ6ZT52 329 aaPredicted RBP10.51□□□□□ -0.73
HDDC3-204ENST00000559834 TEX2Q8IWB9 1127 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 FANCBQ8NB91 859 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 PLVAPQ9BX97 442 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 FTHL17Q9BXU8 183 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 C11orf16Q9NQ32 467 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 JADE2Q9NQC1 790 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 CLDND1Q9NY35 253 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 PCDHA6Q9UN73 950 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 SUPT16HQ9Y5B9 1047 aaKnown RBP10.51□□□□□ -0.73
HDDC3-204ENST00000559834 PCDHA8Q9Y5H6 950 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 SQORQ9Y6N5 450 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms