RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 SAMM50Q9Y512 469 aa4.97□□□□□ -1.61
SNX1-205ENST00000559339 NFASCO94856 1347 aa4.97□□□□□ -1.61
SNX1-205ENST00000559339 EMSYQ7Z589 1322 aa4.97□□□□□ -1.61
SNX1-205ENST00000559339 STK36Q9NRP7 1315 aa4.97□□□□□ -1.61
SNX1-205ENST00000559339 MCM3APO60318 1980 aa4.96□□□□□ -1.61
SNX1-205ENST00000559339 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.96□□□□□ -1.62
SNX1-205ENST00000559339 CCDC194A0A1B0GVG4 234 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.96□□□□□ -1.62
SNX1-205ENST00000559339 RRN3P2A6NIE6 340 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 FAM86B1E9PN63 330 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 HAS3O00219 553 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 BACH1O14867 736 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 ATP9AO75110 1047 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 CAND2O75155 1236 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 RPLP2P05387 115 aaKnown RBP4.96□□□□□ -1.62
SNX1-205ENST00000559339 FAM86B2P0C5J1 330 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 IQCF3P0C7M6 154 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 SMIM10L2AP0DMW4 78 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 SMIM10L2BP0DMW5 78 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 SELPP16109 830 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 MARK3P27448 753 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 CIITAP33076 1130 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 STAT5BP51692 787 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 NUBP1P53384 320 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 ACTR2P61160 394 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 SMAD3P84022 425 aaKnown RBP4.96□□□□□ -1.62
SNX1-205ENST00000559339 KRT76Q01546 638 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 SEMA3FQ13275 785 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 NONOQ15233 471 aaKnown RBP eCLIP4.96□□□□□ -1.62
SNX1-205ENST00000559339 RABEP1Q15276 862 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 SAFBQ15424 915 aaKnown RBP eCLIP4.96□□□□□ -1.62
SNX1-205ENST00000559339 ME3Q16798 604 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 UTP14CQ5TAP6 766 aaKnown RBP4.96□□□□□ -1.62
SNX1-205ENST00000559339 FAM160B1Q5W0V3 765 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 GDF6Q6KF10 455 aaPredicted RBP4.96□□□□□ -1.62
SNX1-205ENST00000559339 MIS18BP1Q6P0N0 1132 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 TAF2Q6P1X5 1199 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 OTOP2Q7RTS6 562 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 KRT25Q7Z3Z0 450 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 DEFB128Q7Z7B8 93 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 RSPH3Q86UC2 560 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 CKAP2LQ8IYA6 745 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 SMAP1Q8IYB5 467 aaPredicted RBP4.96□□□□□ -1.62
SNX1-205ENST00000559339 DAGLBQ8NCG7 672 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 CYP2W1Q8TAV3 490 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 TBCKQ8TEA7 893 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 AFAP1L1Q8TED9 768 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 GTF3C6Q969F1 213 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 SCLYQ96I15 445 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 ZSCAN31Q96LW9 406 aaPredicted RBP4.96□□□□□ -1.62
SNX1-205ENST00000559339 NAP1L4Q99733 375 aaKnown RBP4.96□□□□□ -1.62
SNX1-205ENST00000559339 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.96□□□□□ -1.623e-6■□□□□ 9.3
SNX1-205ENST00000559339 FTOQ9C0B1 505 aaKnown RBP eCLIP4.96□□□□□ -1.62
SNX1-205ENST00000559339 RNPEPQ9H4A4 650 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 AGO4Q9HCK5 861 aaKnown RBP4.96□□□□□ -1.62
SNX1-205ENST00000559339 IL23AQ9NPF7 189 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 SH2B1Q9NRF2 756 aaPredicted RBP4.96□□□□□ -1.62
SNX1-205ENST00000559339 TRPC6Q9Y210 931 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 KIF3AQ9Y496 699 aa4.96□□□□□ -1.62
SNX1-205ENST00000559339 MYH6P13533 1939 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 FRMPD3Q5JV73 1810 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 IGLV3-22A0A075B6J6 115 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 ZBBXA8MT70 800 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 WDR64B1ANS9 1081 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 RSPH10B2B2RC85 870 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 KIF28PB7ZC32 967 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 M0QZ92 97 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 DDX39AO00148 427 aaKnown RBP4.95□□□□□ -1.62
SNX1-205ENST00000559339 MARCH6O60337 910 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 CCNT1O60563 726 aaKnown RBP4.95□□□□□ -1.62
SNX1-205ENST00000559339 GAS7O60861 476 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 EFCAB14O75071 495 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 BAIAP3O94812 1187 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 SLC34A2O95436 690 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 PSAPP07602 524 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 RSPH10BP0C881 870 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 ARP10275 920 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 ACRP10323 421 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 CKBP12277 381 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 GCFC2P16383 781 aaKnown RBP4.95□□□□□ -1.62
SNX1-205ENST00000559339 SFNP31947 248 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 KRT2P35908 639 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 THPOP40225 353 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 KCNJ6P48051 423 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 MCM2P49736 904 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 RBM25P49756 843 aaKnown RBP4.95□□□□□ -1.62
SNX1-205ENST00000559339 HMGN5P82970 282 aaKnown RBP4.95□□□□□ -1.62
SNX1-205ENST00000559339 RBL2Q08999 1139 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 PPFIA1Q13136 1202 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 GNL2Q13823 731 aaKnown RBP4.95□□□□□ -1.62
SNX1-205ENST00000559339 LETM2Q2VYF4 491 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 Q4G0T1 1027 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 TMEM240Q5SV17 173 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 C9orf50Q5SZB4 431 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 ZNF697Q5TEC3 545 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 IER5Q5VY09 327 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 PPP4R3AQ6IN85 833 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 ZNF746Q6NUN9 644 aaPredicted RBP4.95□□□□□ -1.62
SNX1-205ENST00000559339 PDXDC2PQ6P474 469 aa4.95□□□□□ -1.62
SNX1-205ENST00000559339 MOXD1Q6UVY6 613 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms