RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 KLHL18O94889 574 aa7.38□□□□□ -1.23
VPS13C-208ENST00000559119 LTFP02788 710 aa7.38□□□□□ -1.23
VPS13C-208ENST00000559119 ENO2P09104 434 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-208ENST00000559119 FGFR1P11362 822 aa7.38□□□□□ -1.23
VPS13C-208ENST00000559119 GLRBP48167 497 aa7.38□□□□□ -1.23
VPS13C-208ENST00000559119 CDSNQ15517 529 aa7.38□□□□□ -1.23
VPS13C-208ENST00000559119 SKIDA1Q1XH10 827 aa7.38□□□□□ -1.23
VPS13C-208ENST00000559119 KCNT2Q6UVM3 1135 aa7.38□□□□□ -1.23
VPS13C-208ENST00000559119 NSMFQ6X4W1 530 aa7.38□□□□□ -1.23
VPS13C-208ENST00000559119 PALM2Q8IXS6 379 aa7.38□□□□□ -1.23
VPS13C-208ENST00000559119 DNERQ8NFT8 737 aa7.38□□□□□ -1.23
VPS13C-208ENST00000559119 ARHGAP20Q9P2F6 1191 aa7.38□□□□□ -1.23
VPS13C-208ENST00000559119 ZFP69BQ9UJL9 534 aa7.38□□□□□ -1.23
VPS13C-208ENST00000559119 PABPC1P11940 636 aaKnown RBP7.37□□□□□ -1.23
VPS13C-208ENST00000559119 TACR2P21452 398 aa7.37□□□□□ -1.23
VPS13C-208ENST00000559119 GPR85P60893 370 aa7.37□□□□□ -1.23
VPS13C-208ENST00000559119 Q6ZUG5 572 aa7.37□□□□□ -1.23
VPS13C-208ENST00000559119 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.37□□□□□ -1.23
VPS13C-208ENST00000559119 IFNL3Q8IZI9 196 aa7.37□□□□□ -1.23
VPS13C-208ENST00000559119 DSEQ9UL01 958 aa7.37□□□□□ -1.23
VPS13C-208ENST00000559119 KNG1P01042 644 aa7.36□□□□□ -1.23
VPS13C-208ENST00000559119 GDF5P43026 501 aa7.36□□□□□ -1.23
VPS13C-208ENST00000559119 SELENOPP49908 381 aa7.36□□□□□ -1.23
VPS13C-208ENST00000559119 PFKPQ01813 784 aa7.36□□□□□ -1.23
VPS13C-208ENST00000559119 IFRD2Q12894 506 aaPredicted RBP7.36□□□□□ -1.23
VPS13C-208ENST00000559119 CD276Q5ZPR3 534 aa7.36□□□□□ -1.23
VPS13C-208ENST00000559119 IFNL2Q8IZJ0 200 aa7.36□□□□□ -1.23
VPS13C-208ENST00000559119 STPG3Q8N7X2 389 aa7.36□□□□□ -1.23
VPS13C-208ENST00000559119 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.36□□□□□ -1.23
VPS13C-208ENST00000559119 ARHGEF4Q9NR80 690 aa7.36□□□□□ -1.23
VPS13C-208ENST00000559119 TRAV20A0A0B4J274 112 aa7.35□□□□□ -1.23
VPS13C-208ENST00000559119 PATE3B3GLJ2 98 aa7.35□□□□□ -1.23
VPS13C-208ENST00000559119 FAM47E-STBD1D6RA91 191 aa7.35□□□□□ -1.23
VPS13C-208ENST00000559119 NKRFO15226 690 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS13C-208ENST00000559119 ZNF623O75123 536 aa7.35□□□□□ -1.23
VPS13C-208ENST00000559119 SOD2P04179 222 aa7.35□□□□□ -1.23
VPS13C-208ENST00000559119 NTRK3Q16288 839 aa7.35□□□□□ -1.23
VPS13C-208ENST00000559119 STYK1Q6J9G0 422 aa7.35□□□□□ -1.23
VPS13C-208ENST00000559119 DPH6Q7L8W6 267 aa7.35□□□□□ -1.23
VPS13C-208ENST00000559119 OSBP2Q969R2 916 aa7.35□□□□□ -1.23
VPS13C-208ENST00000559119 ALG1Q9BT22 464 aa7.35□□□□□ -1.23
VPS13C-208ENST00000559119 PDGFDQ9GZP0 370 aaPredicted RBP7.35□□□□□ -1.23
VPS13C-208ENST00000559119 MEGF9Q9H1U4 602 aa7.35□□□□□ -1.23
VPS13C-208ENST00000559119 SEMA4AQ9H3S1 761 aa7.35□□□□□ -1.23
VPS13C-208ENST00000559119 BLACEA4D250 179 aa7.34□□□□□ -1.23
VPS13C-208ENST00000559119 MUSKO15146 869 aa7.34□□□□□ -1.23
VPS13C-208ENST00000559119 KLF4O43474 513 aa7.34□□□□□ -1.23
VPS13C-208ENST00000559119 KCTD1Q719H9 257 aa7.34□□□□□ -1.23
VPS13C-208ENST00000559119 LRRC47Q8N1G4 583 aaKnown RBP7.34□□□□□ -1.23
VPS13C-208ENST00000559119 ST13P5Q8NFI4 369 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-208ENST00000559119 AJUBAQ96IF1 538 aa7.34□□□□□ -1.23
VPS13C-208ENST00000559119 VPS11Q9H270 941 aa7.34□□□□□ -1.23
VPS13C-208ENST00000559119 SEC61A2Q9H9S3 476 aa7.34□□□□□ -1.23
VPS13C-208ENST00000559119 KCND1Q9NSA2 647 aa7.34□□□□□ -1.23
VPS13C-208ENST00000559119 TELO2Q9Y4R8 837 aa7.34□□□□□ -1.23
VPS13C-208ENST00000559119 ZNF839A8K0R7 811 aa7.33□□□□□ -1.24
VPS13C-208ENST00000559119 H0Y858 1186 aa7.33□□□□□ -1.24
VPS13C-208ENST00000559119 CNOT4O95628 575 aaKnown RBP7.33□□□□□ -1.24
VPS13C-208ENST00000559119 HS1BP3Q53T59 392 aa7.33□□□□□ -1.24
VPS13C-208ENST00000559119 HABP4Q5JVS0 413 aaKnown RBP7.33□□□□□ -1.24
VPS13C-208ENST00000559119 USP51Q70EK9 711 aa7.33□□□□□ -1.24
VPS13C-208ENST00000559119 GPR155Q7Z3F1 870 aa7.33□□□□□ -1.24
VPS13C-208ENST00000559119 SLC43A3Q8NBI5 491 aa7.33□□□□□ -1.24
VPS13C-208ENST00000559119 SORCS2Q96PQ0 1159 aa7.33□□□□□ -1.24
VPS13C-208ENST00000559119 LMF1Q96S06 567 aa7.33□□□□□ -1.24
VPS13C-208ENST00000559119 IPPKQ9H8X2 491 aa7.33□□□□□ -1.24
VPS13C-208ENST00000559119 SLC4A7Q9Y6M7 1214 aa7.33□□□□□ -1.24
VPS13C-208ENST00000559119 CSF2RBP32927 897 aa7.32□□□□□ -1.24
VPS13C-208ENST00000559119 EPHA5P54756 1037 aa7.32□□□□□ -1.24
VPS13C-208ENST00000559119 ZNF568Q3ZCX4 644 aa7.32□□□□□ -1.24
VPS13C-208ENST00000559119 CRIP3Q6Q6R5 217 aa7.32□□□□□ -1.24
VPS13C-208ENST00000559119 REXO1L1PQ8IX06 675 aa7.32□□□□□ -1.24
VPS13C-208ENST00000559119 GIMAP8Q8ND71 665 aaPredicted RBP7.32□□□□□ -1.24
VPS13C-208ENST00000559119 Q8TCH9 128 aa7.32□□□□□ -1.24
VPS13C-208ENST00000559119 WWC2-AS2Q96NR7 200 aa7.32□□□□□ -1.24
VPS13C-208ENST00000559119 LRRC37BQ96QE4 947 aa7.32□□□□□ -1.24
VPS13C-208ENST00000559119 TACO1Q9BSH4 297 aaKnown RBP7.32□□□□□ -1.24
VPS13C-208ENST00000559119 ZNF747Q9BV97 191 aa7.32□□□□□ -1.24
VPS13C-208ENST00000559119 SCAND2PQ9GZW5 306 aaPredicted RBP7.32□□□□□ -1.24
VPS13C-208ENST00000559119 FZD7O75084 574 aa7.31□□□□□ -1.24
VPS13C-208ENST00000559119 AMHP03971 560 aa7.31□□□□□ -1.24
VPS13C-208ENST00000559119 YOD1Q5VVQ6 348 aaPredicted RBP7.31□□□□□ -1.24
VPS13C-208ENST00000559119 Q8N1X5 172 aa7.31□□□□□ -1.24
VPS13C-208ENST00000559119 GNRHR2Q96P88 292 aa7.31□□□□□ -1.24
VPS13C-208ENST00000559119 GMLQ99445 158 aa7.31□□□□□ -1.24
VPS13C-208ENST00000559119 TRIM55Q9BYV6 548 aa7.31□□□□□ -1.24
VPS13C-208ENST00000559119 ACOT7O00154 380 aa7.3□□□□□ -1.24
VPS13C-208ENST00000559119 CYR61O00622 381 aa7.3□□□□□ -1.24
VPS13C-208ENST00000559119 HMGA2P52926 109 aa7.3□□□□□ -1.24
VPS13C-208ENST00000559119 RAB33AQ14088 237 aa7.3□□□□□ -1.24
VPS13C-208ENST00000559119 USP10Q14694 798 aaKnown RBP7.3□□□□□ -1.24
VPS13C-208ENST00000559119 R3HDM1Q15032 1099 aaKnown RBP7.3□□□□□ -1.24
VPS13C-208ENST00000559119 SPDYAQ5MJ70 313 aa7.3□□□□□ -1.24
VPS13C-208ENST00000559119 CD244Q9BZW8 370 aa7.3□□□□□ -1.24
VPS13C-208ENST00000559119 KATNBL1Q9H079 304 aa7.3□□□□□ -1.24
VPS13C-208ENST00000559119 TESMINQ9Y4I5 508 aa7.3□□□□□ -1.24
VPS13C-208ENST00000559119 IL18BPO95998 194 aa7.29□□□□□ -1.24
VPS13C-208ENST00000559119 PAK1Q13153 545 aa7.29□□□□□ -1.24
VPS13C-208ENST00000559119 BTBD8Q5XKL5 378 aa7.29□□□□□ -1.24
VPS13C-208ENST00000559119 DPP8Q6V1X1 898 aaPredicted RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms