RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 VCPKMTQ9H867 229 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 MYOZ2Q9NPC6 264 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 LRRC53A6NM62 1247 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 ARP10275 920 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 H2AFXP16104 143 aaPredicted RBP11.76□□□□□ -0.53
CUX1-217ENST00000558836 ARID5AQ03989 594 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 KCNMA1Q12791 1236 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 ADAM9Q13443 819 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 ZCWPW2Q504Y3 356 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 LDHDQ86WU2 507 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 ERMNQ8TAM6 284 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 CCDC42Q96M95 316 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 SH2D3AQ9BRG2 576 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 NUP58Q9BVL2 599 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 ST7Q9NRC1 585 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 COL4A3BPQ9Y5P4 624 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 BAG6P46379 1132 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 MMP14P50281 582 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 LRCH2Q5VUJ6 765 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 ANKRD13CQ8N6S4 541 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 DYDC2Q96IM9 177 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 RNF216Q9NWF9 866 aaPredicted RBP11.75□□□□□ -0.53
CUX1-217ENST00000558836 ARHGAP20Q9P2F6 1191 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 DDX41Q9UJV9 622 aaKnown RBP11.75□□□□□ -0.53
CUX1-217ENST00000558836 ABCB11O95342 1321 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 CLIC2O15247 247 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 HOXD13P35453 343 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 MEA1Q16626 185 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 MAEAQ7L5Y9 396 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 DRC1Q96MC2 740 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 KCTD10Q9H3F6 313 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 PIM2Q9P1W9 311 aa11.75□□□□□ -0.53
CUX1-217ENST00000558836 FAM170AA1A519 330 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 NFIBO00712 420 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 SLITRK3O94933 977 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 NR2F2P24468 414 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 CHMP4BP1P59074 171 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 TBC1D10BQ4KMP7 808 aaPredicted RBP11.74□□□□□ -0.53
CUX1-217ENST00000558836 MOXD1Q6UVY6 613 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 OTOP1Q7RTM1 612 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 CACNA2D4Q7Z3S7 1137 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 SYT2Q8N9I0 419 aaPredicted RBP11.74□□□□□ -0.53
CUX1-217ENST00000558836 CHURC1Q8WUH1 139 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 JDP2Q8WYK2 163 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 FAM20AQ96MK3 541 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 PURBQ96QR8 312 aaKnown RBP11.74□□□□□ -0.53
CUX1-217ENST00000558836 NAPGQ99747 312 aaPredicted RBP11.74□□□□□ -0.53
CUX1-217ENST00000558836 WRAP73Q9P2S5 460 aaPredicted RBP11.74□□□□□ -0.53
CUX1-217ENST00000558836 CDC23Q9UJX2 597 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 GJA3Q9Y6H8 435 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 FGFR1OPO95684 399 aaKnown RBP11.74□□□□□ -0.53
CUX1-217ENST00000558836 ATP1A1P05023 1023 aaKnown RBP11.74□□□□□ -0.53
CUX1-217ENST00000558836 CIITAP33076 1130 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 EIF4A3P38919 411 aaKnown RBP11.74□□□□□ -0.53
CUX1-217ENST00000558836 CIAPIN1Q6FI81 312 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 JAKMIP2Q96AA8 810 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 CAPZA3Q96KX2 299 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 PARD6BQ9BYG5 372 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 DEF6Q9H4E7 631 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 RABGAP1Q9Y3P9 1069 aa11.74□□□□□ -0.53
CUX1-217ENST00000558836 PIK3CDO00329 1044 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 GCNT3O95395 438 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 RHOXF2BP0C7M4 288 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 ZC2HC1CQ53FD0 456 aaPredicted RBP11.73□□□□□ -0.53
CUX1-217ENST00000558836 RSRC2Q7L4I2 434 aaKnown RBP11.73□□□□□ -0.53
CUX1-217ENST00000558836 RETREG2Q8NC44 543 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 NEK11Q8NG66 645 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 RHOXF2Q9BQY4 288 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 RANBP17Q9H2T7 1088 aaKnown RBP11.73□□□□□ -0.53
CUX1-217ENST00000558836 COL20A1Q9P218 1284 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 CCPG1Q9ULG6 757 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.73□□□□□ -0.53
CUX1-217ENST00000558836 MYH10P35580 1976 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 TBX3O15119 743 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 GAS7O60861 476 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 IPO7O95373 1038 aaKnown RBP11.73□□□□□ -0.53
CUX1-217ENST00000558836 NMT1P30419 496 aaKnown RBP11.73□□□□□ -0.53
CUX1-217ENST00000558836 CYLC1P35663 651 aaPredicted RBP11.73□□□□□ -0.53
CUX1-217ENST00000558836 POLR2FP61218 127 aaKnown RBP11.73□□□□□ -0.53
CUX1-217ENST00000558836 GFPT1Q06210 699 aaPredicted RBP11.73□□□□□ -0.53
CUX1-217ENST00000558836 PLS1Q14651 629 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 CEP55Q53EZ4 464 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 BANK1Q8NDB2 785 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 AGBL3Q8NEM8 1001 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 IL31RAQ8NI17 732 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 HINFPQ9BQA5 517 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 LSM14BQ9BX40 385 aaKnown RBP11.73□□□□□ -0.53
CUX1-217ENST00000558836 GTPBP4Q9BZE4 634 aaKnown RBP11.73□□□□□ -0.53
CUX1-217ENST00000558836 TAOK3Q9H2K8 898 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 RAVER2Q9HCJ3 691 aaKnown RBP11.73□□□□□ -0.53
CUX1-217ENST00000558836 PGAP2Q9UHJ9 254 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 PLAGL2Q9UPG8 496 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 BCS1LQ9Y276 419 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 AKR1B10O60218 316 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 ACTN1P12814 892 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 ALAS1P13196 640 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 CASP4P49662 377 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 RINT1Q6NUQ1 792 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 SRGAP1Q7Z6B7 1085 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 CNKSR2Q8WXI2 1034 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms