RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 FOSP01100 380 aaPredicted RBP14.29□□□□□ -0.12
SMAD3-208ENST00000558827 ACTN1P12814 892 aa14.29□□□□□ -0.12
SMAD3-208ENST00000558827 FOSL2P15408 326 aa14.29□□□□□ -0.12
SMAD3-208ENST00000558827 RCAN1P53805 252 aa14.29□□□□□ -0.12
SMAD3-208ENST00000558827 MBTPS1Q14703 1052 aa14.29□□□□□ -0.12
SMAD3-208ENST00000558827 FAM117BQ6P1L5 589 aa14.29□□□□□ -0.12
SMAD3-208ENST00000558827 TRAF7Q6Q0C0 670 aa14.29□□□□□ -0.12
SMAD3-208ENST00000558827 SEPT1Q8WYJ6 367 aa14.29□□□□□ -0.12
SMAD3-208ENST00000558827 CDHR1Q96JP9 859 aa14.29□□□□□ -0.12
SMAD3-208ENST00000558827 AIFM3Q96NN9 605 aa14.29□□□□□ -0.12
SMAD3-208ENST00000558827 C6orf50Q9HD87 102 aa14.29□□□□□ -0.12
SMAD3-208ENST00000558827 RFXAPO00287 272 aa14.28□□□□□ -0.12
SMAD3-208ENST00000558827 SEC24BO95487 1268 aa14.28□□□□□ -0.12
SMAD3-208ENST00000558827 RFC2P35250 354 aa14.28□□□□□ -0.12
SMAD3-208ENST00000558827 CLK2P49760 499 aaKnown RBP14.28□□□□□ -0.12
SMAD3-208ENST00000558827 SSRP1Q08945 709 aaKnown RBP14.28□□□□□ -0.12
SMAD3-208ENST00000558827 ITGB3BPQ13352 177 aaPredicted RBP14.28□□□□□ -0.12
SMAD3-208ENST00000558827 CEP55Q53EZ4 464 aa14.28□□□□□ -0.12
SMAD3-208ENST00000558827 ERICH6BQ5W0A0 696 aa14.28□□□□□ -0.12
SMAD3-208ENST00000558827 RUFY4Q6ZNE9 571 aa14.28□□□□□ -0.12
SMAD3-208ENST00000558827 SERINC5Q86VE9 423 aa14.28□□□□□ -0.12
SMAD3-208ENST00000558827 PLA2G4DQ86XP0 818 aa14.28□□□□□ -0.12
SMAD3-208ENST00000558827 GIMAP8Q8ND71 665 aaPredicted RBP14.28□□□□□ -0.12
SMAD3-208ENST00000558827 LMBR1Q8WVP7 490 aa14.28□□□□□ -0.12
SMAD3-208ENST00000558827 PCYT2Q99447 389 aa14.28□□□□□ -0.12
SMAD3-208ENST00000558827 SLC28A3Q9HAS3 691 aa14.28□□□□□ -0.12
SMAD3-208ENST00000558827 AGO4Q9HCK5 861 aaKnown RBP14.28□□□□□ -0.12
SMAD3-208ENST00000558827 ZNF215Q9UL58 517 aaPredicted RBP14.28□□□□□ -0.12
SMAD3-208ENST00000558827 TANC1Q9C0D5 1861 aa14.27□□□□□ -0.12
SMAD3-208ENST00000558827 RSPH10B2B2RC85 870 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 FAM86B1E9PN63 330 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 hCG_1984214I3L0E3 225 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 CPLX1O14810 134 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 ARHGEF15O94989 841 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 PFKMP08237 780 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 FAM86B2P0C5J1 330 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 RSPH10BP0C881 870 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 IFNAR1P17181 557 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 SREBF1P36956 1147 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 NLRP5P59047 1200 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 DEFB103AP81534 67 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 PPFIA1Q13136 1202 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 RAB30Q15771 203 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 TRMT1LQ7Z2T5 733 aaKnown RBP14.27□□□□□ -0.13
SMAD3-208ENST00000558827 SPRED2Q7Z698 418 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 REXO1Q8N1G1 1221 aaKnown RBP14.27□□□□□ -0.13
SMAD3-208ENST00000558827 FBXL16Q8N461 479 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 ZNF713Q8N859 430 aaPredicted RBP14.27□□□□□ -0.13
SMAD3-208ENST00000558827 MAFAQ8NHW3 353 aaPredicted RBP14.27□□□□□ -0.13
SMAD3-208ENST00000558827 TRAPPC12Q8WVT3 735 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 SDF4Q9BRK5 362 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 TM6SF1Q9BZW5 370 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 JPH1Q9HDC5 661 aaPredicted RBP14.27□□□□□ -0.13
SMAD3-208ENST00000558827 SLC9A2Q9UBY0 812 aa14.27□□□□□ -0.13
SMAD3-208ENST00000558827 MEIS1O00470 390 aa14.26□□□□□ -0.13
SMAD3-208ENST00000558827 CA3P07451 260 aa14.26□□□□□ -0.13
SMAD3-208ENST00000558827 IGFBP4P22692 258 aa14.26□□□□□ -0.13
SMAD3-208ENST00000558827 KCNJ6P48051 423 aa14.26□□□□□ -0.13
SMAD3-208ENST00000558827 EVCP57679 992 aa14.26□□□□□ -0.13
SMAD3-208ENST00000558827 ACTR2P61160 394 aa14.26□□□□□ -0.13
SMAD3-208ENST00000558827 AP3B2Q13367 1082 aa14.26□□□□□ -0.13
SMAD3-208ENST00000558827 CCDC85BQ15834 202 aaPredicted RBP14.26□□□□□ -0.13
SMAD3-208ENST00000558827 PPP2R2DQ66LE6 453 aa14.26□□□□□ -0.13
SMAD3-208ENST00000558827 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.26□□□□□ -0.13
SMAD3-208ENST00000558827 DBF4BQ8NFT6 615 aa14.26□□□□□ -0.13
SMAD3-208ENST00000558827 RNF26Q9BY78 433 aaPredicted RBP14.26□□□□□ -0.13
SMAD3-208ENST00000558827 ZMYND12Q9H0C1 365 aa14.26□□□□□ -0.13
SMAD3-208ENST00000558827 CHD9Q3L8U1 2897 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 NID2Q14112 1375 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 CCNE2O96020 404 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 GNAT1P11488 350 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 WDR5P61964 334 aaKnown RBP14.25□□□□□ -0.13
SMAD3-208ENST00000558827 ADGRE1Q14246 886 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 GRIK4Q16099 956 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 PRR16Q569H4 304 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 CNKSR3Q6P9H4 555 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 HERC6Q8IVU3 1022 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 TRIM22Q8IYM9 498 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 NECAB1Q8N987 351 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 USP38Q8NB14 1042 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 CCDC12Q8WUD4 166 aaPredicted RBP14.25□□□□□ -0.13
SMAD3-208ENST00000558827 GJA10Q969M2 543 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 ZNF274Q96GC6 653 aaPredicted RBP14.25□□□□□ -0.13
SMAD3-208ENST00000558827 ZBED2Q9BTP6 218 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 FAM49AQ9H0Q0 323 aaPredicted RBP14.25□□□□□ -0.13
SMAD3-208ENST00000558827 GLT8D2Q9H1C3 349 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 SMARCAD1Q9H4L7 1026 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 GJB4Q9NTQ9 266 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 TPCN1Q9ULQ1 816 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 KCNJ14Q9UNX9 436 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 TRPC6Q9Y210 931 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 PCDHA11Q9Y5I1 949 aa14.25□□□□□ -0.13
SMAD3-208ENST00000558827 ESYT2A0FGR8 921 aa14.24□□□□□ -0.13
SMAD3-208ENST00000558827 LCHNA4D1U4 455 aa14.24□□□□□ -0.13
SMAD3-208ENST00000558827 BACH1O14867 736 aa14.24□□□□□ -0.13
SMAD3-208ENST00000558827 MAFGO15525 162 aa14.24□□□□□ -0.13
SMAD3-208ENST00000558827 EPB41L2O43491 1005 aaKnown RBP14.24□□□□□ -0.13
SMAD3-208ENST00000558827 LGR5O75473 907 aa14.24□□□□□ -0.13
SMAD3-208ENST00000558827 CXCL10P02778 98 aa14.24□□□□□ -0.13
SMAD3-208ENST00000558827 INSRRP14616 1297 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms