RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CATSPER3Q86XQ3 398 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 TRIM59Q8IWR1 403 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 AFAP1L1Q8TED9 768 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 ALS2CR12Q96Q35 445 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 FEZ2Q9UHY8 353 aaPredicted RBP14.21□□□□□ -0.13
LDLR-207ENST00000558013 GOLGA6BA6NDN3 693 aa14.21□□□□□ -0.14
LDLR-207ENST00000558013 hCG_1984214I3L0E3 225 aa14.21□□□□□ -0.14
LDLR-207ENST00000558013 MEIS2O14770 477 aa14.21□□□□□ -0.14
LDLR-207ENST00000558013 FAM153BP0C7A2 387 aa14.21□□□□□ -0.14
LDLR-207ENST00000558013 HOXA13P31271 388 aaPredicted RBP14.21□□□□□ -0.14
LDLR-207ENST00000558013 PSMD2Q13200 908 aa14.21□□□□□ -0.14
LDLR-207ENST00000558013 FAM153CQ494X1 144 aa14.21□□□□□ -0.14
LDLR-207ENST00000558013 SIAH1Q8IUQ4 282 aa14.21□□□□□ -0.14
LDLR-207ENST00000558013 ZNF713Q8N859 430 aaPredicted RBP14.21□□□□□ -0.14
LDLR-207ENST00000558013 ANO3Q9BYT9 981 aa14.21□□□□□ -0.14
LDLR-207ENST00000558013 TMEM51Q9NW97 253 aa14.21□□□□□ -0.14
LDLR-207ENST00000558013 FAM153AQ9UHL3 310 aa14.21□□□□□ -0.14
LDLR-207ENST00000558013 FAM184BQ9ULE4 1060 aa14.21□□□□□ -0.14
LDLR-207ENST00000558013 ADAMTSL1Q8N6G6 1762 aa14.21□□□□□ -0.14
LDLR-207ENST00000558013 MYO1CO00159 1063 aa14.2□□□□□ -0.14
LDLR-207ENST00000558013 GDF11O95390 407 aa14.2□□□□□ -0.14
LDLR-207ENST00000558013 HOXA10P31260 410 aaPredicted RBP14.2□□□□□ -0.14
LDLR-207ENST00000558013 HOXD13P35453 343 aa14.2□□□□□ -0.14
LDLR-207ENST00000558013 KIAA0753Q2KHM9 967 aa14.2□□□□□ -0.14
LDLR-207ENST00000558013 SLC9C1Q4G0N8 1177 aa14.2□□□□□ -0.14
LDLR-207ENST00000558013 NOX5Q96PH1 765 aa14.2□□□□□ -0.14
LDLR-207ENST00000558013 ACBD3Q9H3P7 528 aa14.2□□□□□ -0.14
LDLR-207ENST00000558013 BMP2KQ9NSY1 1161 aaPredicted RBP14.2□□□□□ -0.14
LDLR-207ENST00000558013 CEP72Q9P209 647 aa14.2□□□□□ -0.14
LDLR-207ENST00000558013 TAF1LQ8IZX4 1826 aa14.2□□□□□ -0.14
LDLR-207ENST00000558013 CARSP49589 748 aaKnown RBP14.2□□□□□ -0.14
LDLR-207ENST00000558013 JAG1P78504 1218 aa14.2□□□□□ -0.14
LDLR-207ENST00000558013 KCNH2Q12809 1159 aa14.2□□□□□ -0.14
LDLR-207ENST00000558013 SEPT2Q15019 361 aa14.2□□□□□ -0.14
LDLR-207ENST00000558013 CDC37Q16543 378 aaPredicted RBP14.2□□□□□ -0.14
LDLR-207ENST00000558013 ZNF219Q9P2Y4 722 aaPredicted RBP14.2□□□□□ -0.14
LDLR-207ENST00000558013 LTBP4Q8N2S1 1624 aa14.2□□□□□ -0.14
LDLR-207ENST00000558013 FAM86B1E9PN63 330 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 PJA2O43164 708 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 TOM1O60784 492 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 FAM86B2P0C5J1 330 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 NR2F2P24468 414 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 ARL8AQ96BM9 186 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 KCNMB3Q9NPA1 279 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 RRP15Q9Y3B9 282 aaKnown RBP14.19□□□□□ -0.14
LDLR-207ENST00000558013 ATP6V0A2Q9Y487 856 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 UBAP1LF5GYI3 381 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 ZBTB39O15060 712 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 MYBP10242 640 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 TCP1P17987 556 aaKnown RBP14.19□□□□□ -0.14
LDLR-207ENST00000558013 SLC12A3P55017 1021 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 GJB7Q6PEY0 223 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 CCDC65Q8IXS2 484 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 PROM2Q8N271 834 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 IFT81Q8WYA0 676 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 STIM2Q9P246 746 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 AJAP1Q9UKB5 411 aaPredicted RBP14.19□□□□□ -0.14
LDLR-207ENST00000558013 SERPING1P05155 500 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 MCM3P25205 808 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 CASP4P49662 377 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 PTK2Q05397 1052 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 SPIRE1Q08AE8 756 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 KLHL30Q0D2K2 578 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 GPATCH4Q5T3I0 446 aaKnown RBP14.19□□□□□ -0.14
LDLR-207ENST00000558013 SH3BP5LQ7L8J4 393 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 SRLQ86TD4 932 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 SFR1Q86XK3 245 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 SPICE1Q8N0Z3 855 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 REEP2Q9BRK0 252 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 COA1Q9GZY4 146 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 DHX36Q9H2U1 1008 aaKnown RBP14.19□□□□□ -0.14
LDLR-207ENST00000558013 NFU1Q9UMS0 254 aa14.19□□□□□ -0.14
LDLR-207ENST00000558013 ABCB11O95342 1321 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 SSU72P8A0A1W2PR75 194 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 SPATA31C1P0DKV0 1188 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 RBM5P52756 815 aaKnown RBP eCLIP14.18□□□□□ -0.14
LDLR-207ENST00000558013 ARHGAP4P98171 946 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 SLFN13Q68D06 897 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 KCTD16Q68DU8 428 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 C8orf74Q6P047 294 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 GJD4Q96KN9 370 aaPredicted RBP14.18□□□□□ -0.14
LDLR-207ENST00000558013 RGL1Q9NZL6 768 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 CLIC2O15247 247 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 KRT14P02533 472 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 PRLRP16471 622 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 GUCY2FP51841 1108 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 GIT2Q14161 759 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 DCAF17Q5H9S7 520 aaPredicted RBP14.18□□□□□ -0.14
LDLR-207ENST00000558013 IQCEQ6IPM2 695 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 KSR1Q8IVT5 923 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 SP8Q8IXZ3 490 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 SEPT12Q8IYM1 358 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 SH2D3CQ8N5H7 860 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 CRAMP1Q96RY5 1269 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 NT5C3AQ9H0P0 336 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 GANQ9H2C0 597 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 NHSQ6T4R5 1651 aa14.18□□□□□ -0.14
LDLR-207ENST00000558013 GOLGA6CA6NDK9 693 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 GOLGA6DP0CG33 693 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 PAFAH1B1P43034 410 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms