RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 FAM133AQ8N9E0 248 aa12.97□□□□□ -0.33
VIPAS39-211ENST00000557658 PACSIN1Q9BY11 444 aa12.97□□□□□ -0.33
VIPAS39-211ENST00000557658 CDK8P49336 464 aa12.97□□□□□ -0.33
VIPAS39-211ENST00000557658 ERVK-9P63128 1117 aa12.97□□□□□ -0.33
VIPAS39-211ENST00000557658 HDLBPQ00341 1268 aaKnown RBP12.97□□□□□ -0.33
VIPAS39-211ENST00000557658 DIXDC1Q155Q3 683 aa12.97□□□□□ -0.33
VIPAS39-211ENST00000557658 CDCA7Q9BWT1 371 aaPredicted RBP12.97□□□□□ -0.33
VIPAS39-211ENST00000557658 CENPHQ9H3R5 247 aa12.97□□□□□ -0.33
VIPAS39-211ENST00000557658 SNED1Q8TER0 1413 aa12.97□□□□□ -0.33
VIPAS39-211ENST00000557658 KIF4AO95239 1232 aa12.96□□□□□ -0.33
VIPAS39-211ENST00000557658 HPDP32754 393 aaPredicted RBP12.96□□□□□ -0.33
VIPAS39-211ENST00000557658 HSD17B3P37058 310 aa12.96□□□□□ -0.33
VIPAS39-211ENST00000557658 DDR1Q08345 913 aa12.96□□□□□ -0.33
VIPAS39-211ENST00000557658 DRP2Q13474 957 aa12.96□□□□□ -0.33
VIPAS39-211ENST00000557658 PLCB4Q15147 1175 aa12.96□□□□□ -0.33
VIPAS39-211ENST00000557658 ENOX2Q16206 610 aaKnown RBP12.96□□□□□ -0.33
VIPAS39-211ENST00000557658 DDB1Q16531 1140 aa12.96□□□□□ -0.33
VIPAS39-211ENST00000557658 RUFY4Q6ZNE9 571 aa12.96□□□□□ -0.33
VIPAS39-211ENST00000557658 C16orf86Q6ZW13 317 aa12.96□□□□□ -0.33
VIPAS39-211ENST00000557658 NYXQ9GZU5 481 aa12.96□□□□□ -0.33
VIPAS39-211ENST00000557658 UBA5Q9GZZ9 404 aa12.96□□□□□ -0.33
VIPAS39-211ENST00000557658 RIOX1Q9H6W3 641 aa12.96□□□□□ -0.33
VIPAS39-211ENST00000557658 USP11P51784 963 aa12.96□□□□□ -0.34
VIPAS39-211ENST00000557658 ACTN3Q08043 901 aaPredicted RBP12.96□□□□□ -0.34
VIPAS39-211ENST00000557658 IFT88Q13099 833 aa12.96□□□□□ -0.34
VIPAS39-211ENST00000557658 CCDC65Q8IXS2 484 aa12.96□□□□□ -0.34
VIPAS39-211ENST00000557658 C3orf20Q8ND61 904 aa12.96□□□□□ -0.34
VIPAS39-211ENST00000557658 ACTRT1Q8TDG2 376 aa12.96□□□□□ -0.34
VIPAS39-211ENST00000557658 SCFD2Q8WU76 684 aa12.96□□□□□ -0.34
VIPAS39-211ENST00000557658 CALR3Q96L12 384 aaKnown RBP12.96□□□□□ -0.34
VIPAS39-211ENST00000557658 GANQ9H2C0 597 aa12.96□□□□□ -0.34
VIPAS39-211ENST00000557658 VCPKMTQ9H867 229 aa12.96□□□□□ -0.34
VIPAS39-211ENST00000557658 USP17L5A8MUK1 530 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 CEP104O60308 925 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 SSBP05455 408 aaKnown RBP eCLIP12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 HSPA2P54652 639 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 BIRC3Q13489 604 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 NELFCDQ8IXH7 590 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 PPANQ9NQ55 473 aaKnown RBP12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 MARCH6O60337 910 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 ECHS1P30084 290 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 CTNNA1P35221 906 aaKnown RBP12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 TNNI2P48788 182 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 GSCP56915 257 aaPredicted RBP12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 MTMR3Q13615 1198 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 ECM1Q16610 540 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 TBC1D9BQ66K14 1250 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 COA7Q96BR5 231 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 CYFIP2Q96F07 1278 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 CEP95Q96GE4 821 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 NT5C3AQ9H0P0 336 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 A1CFQ9NQ94 594 aaKnown RBP12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 TBC1D7Q9P0N9 293 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 BZW2Q9Y6E2 419 aaKnown RBP12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 KDM3AQ9Y4C1 1321 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 IRS2Q9Y4H2 1338 aa12.95□□□□□ -0.34
VIPAS39-211ENST00000557658 COL5A3P25940 1745 aaPredicted RBP12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 GMNCA6NCL1 334 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 H0YGN5 161 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 PGRMC1O00264 195 aaKnown RBP12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 EDIL3O43854 480 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 SMTNP53814 917 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 C6orf89Q6UWU4 347 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 CCDC121Q6ZUS5 278 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 NFS1Q9Y697 457 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 CDK5RAP2Q96SN8 1893 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 CCDC188H7C350 402 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 CETN3O15182 167 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 ADAM9Q13443 819 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 UAP1Q16222 522 aaPredicted RBP12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 PPP4R3CPQ6ZMV5 832 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 CCDC13Q8IYE1 715 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 ACTR5Q9H9F9 607 aaPredicted RBP12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 KANSL2Q9H9L4 492 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 DDX25Q9UHL0 483 aaKnown RBP12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 KIF13BQ9NQT8 1826 aa12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 DDX60LQ5H9U9 1706 aaKnown RBP12.94□□□□□ -0.34
VIPAS39-211ENST00000557658 MYH7BA7E2Y1 1941 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 RGL2O15211 777 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 SART1O43290 800 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 MAP2K2P36507 400 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 PTK2Q05397 1052 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 ZNF844Q08AG5 666 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 KCNH2Q12809 1159 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 HERC4Q5GLZ8 1057 aaPredicted RBP12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 AGBL2Q5U5Z8 902 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 NBPF5PQ86XG9 351 aaPredicted RBP12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 GPATCH11Q8N954 259 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 SPAG5Q96R06 1193 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 EMILIN3Q9NT22 766 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 SLC12A6Q9UHW9 1150 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 FRMPD2Q68DX3 1309 aaPredicted RBP12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 GOLGA6L7A0A1B0GV03 622 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 BHMG1C9JSJ3 638 aaPredicted RBP12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 GRIK5Q16478 980 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 EDRF1Q3B7T1 1238 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 ASPRV1Q53RT3 343 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 ODF2Q5BJF6 829 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 HYIQ5T013 277 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms